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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 8, Exons: 8, Five Prime UTRs: 5, mRNAs: 4, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44980:CDS:1 | 900 | Chr5: 18160600-18161499 | Arabidopsis thaliana |
AT5G44980:CDS:3 | 141 | Chr5: 18161575-18161715 | Arabidopsis thaliana |
AT5G44980:CDS:4 | 267 | Chr5: 18161792-18162058 | Arabidopsis thaliana |
AT5G44980:CDS:1.1 | 900 | Chr5: 18160600-18161499 | Arabidopsis thaliana |
AT5G44980:CDS:3.1 | 141 | Chr5: 18161575-18161715 | Arabidopsis thaliana |
AT5G44980:CDS:4.1 | 267 | Chr5: 18161792-18162058 | Arabidopsis thaliana |
AT5G44980:CDS:2 | 924 | Chr5: 18160600-18161523 | Arabidopsis thaliana |
AT5G44980:CDS:2.1 | 924 | Chr5: 18160600-18161523 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44980:exon:1 | 162 | Chr5: 18160204-18160365 | Arabidopsis thaliana |
AT5G44980:exon:5 | 902 | Chr5: 18160598-18161499 | Arabidopsis thaliana |
AT5G44980:exon:2 | 1296 | Chr5: 18160204-18161499 | Arabidopsis thaliana |
AT5G44980:exon:7 | 141 | Chr5: 18161575-18161715 | Arabidopsis thaliana |
AT5G44980:exon:3 | 133 | Chr5: 18160233-18160365 | Arabidopsis thaliana |
AT5G44980:exon:6 | 1118 | Chr5: 18160598-18161715 | Arabidopsis thaliana |
AT5G44980:exon:4 | 1175 | Chr5: 18160541-18161715 | Arabidopsis thaliana |
AT5G44980:exon:8 | 473 | Chr5: 18161792-18162264 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44980:five_prime_UTR:1 | 162 | Chr5: 18160204-18160365 | Arabidopsis thaliana |
AT5G44980:five_prime_UTR:2 | 396 | Chr5: 18160204-18160599 | Arabidopsis thaliana |
AT5G44980:five_prime_UTR:3 | 133 | Chr5: 18160233-18160365 | Arabidopsis thaliana |
AT5G44980:five_prime_UTR:5 | 2 | Chr5: 18160598-18160599 | Arabidopsis thaliana |
AT5G44980:five_prime_UTR:4 | 59 | Chr5: 18160541-18160599 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G44980.1 | 1678 | Chr5: 18160204-18162264 |
AT5G44980.2 | 1910 | Chr5: 18160204-18162264 |
AT5G44980.3 | 1724 | Chr5: 18160233-18162264 |
AT5G44980.4 | 1648 | Chr5: 18160541-18162264 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44980:three_prime_UTR:3 | 206 | Chr5: 18162059-18162264 | Arabidopsis thaliana |
AT5G44980:three_prime_UTR:1 | 192 | Chr5: 18161524-18161715 | Arabidopsis thaliana |
AT5G44980:three_prime_UTR:2 | 473 | Chr5: 18161792-18162264 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE65420 | 204 | Chr5: 18160353-18160556 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE65420:transposon_fragment:1 | 204 | Chr5: 18160353-18160556 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...