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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43860:CDS:2 | 687 | Chr5: 17631498-17632184 | Arabidopsis thaliana |
AT5G43870:CDS:8 | 209 | Chr5: 17632538-17632746 | Arabidopsis thaliana |
AT5G43870:CDS:6 | 58 | Chr5: 17633133-17633190 | Arabidopsis thaliana |
AT5G43870:CDS:5 | 50 | Chr5: 17633317-17633366 | Arabidopsis thaliana |
AT5G43870:CDS:4 | 207 | Chr5: 17633481-17633687 | Arabidopsis thaliana |
AT5G43870:CDS:3 | 421 | Chr5: 17634050-17634470 | Arabidopsis thaliana |
AT5G43870:CDS:2 | 96 | Chr5: 17635236-17635331 | Arabidopsis thaliana |
AT5G43870:CDS:1 | 321 | Chr5: 17635543-17635863 | Arabidopsis thaliana |
AT5G43870:CDS:7 | 66 | Chr5: 17633125-17633190 | Arabidopsis thaliana |
AT5G43870:CDS:5.1 | 50 | Chr5: 17633317-17633366 | Arabidopsis thaliana |
AT5G43870:CDS:4.1 | 207 | Chr5: 17633481-17633687 | Arabidopsis thaliana |
AT5G43870:CDS:3.1 | 421 | Chr5: 17634050-17634470 | Arabidopsis thaliana |
AT5G43870:CDS:2.1 | 96 | Chr5: 17635236-17635331 | Arabidopsis thaliana |
AT5G43870:CDS:1.1 | 321 | Chr5: 17635543-17635863 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43860:exon:2 | 841 | Chr5: 17631498-17632338 | Arabidopsis thaliana |
AT5G43870:exon:9 | 1321 | Chr5: 17631426-17632746 | Arabidopsis thaliana |
AT5G43870:exon:7 | 58 | Chr5: 17633133-17633190 | Arabidopsis thaliana |
AT5G43870:exon:2 | 373 | Chr5: 17635543-17635915 | Arabidopsis thaliana |
AT5G43870:exon:8 | 881 | Chr5: 17632310-17633190 | Arabidopsis thaliana |
AT5G43870:exon:6 | 50 | Chr5: 17633317-17633366 | Arabidopsis thaliana |
AT5G43870:exon:5 | 207 | Chr5: 17633481-17633687 | Arabidopsis thaliana |
AT5G43870:exon:4 | 421 | Chr5: 17634050-17634470 | Arabidopsis thaliana |
AT5G43870:exon:3 | 96 | Chr5: 17635236-17635331 | Arabidopsis thaliana |
AT5G43870:exon:1 | 403 | Chr5: 17635543-17635945 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43870:five_prime_UTR:2 | 52 | Chr5: 17635864-17635915 | Arabidopsis thaliana |
AT5G43870:five_prime_UTR:1 | 82 | Chr5: 17635864-17635945 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G43860 | locus:2170852 | CLH2 | chlorophyllase 2 | 1913 | Chr5: 17630426-17632338 | A. thaliana | chlorophyllase 2;(source:Araport11) | Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation. | chlorophyllase 2 | ATCLH2, CLH2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G43860.1 | 1177 | Chr5: 17630426-17632338 |
AT5G43870.1 | 2526 | Chr5: 17631426-17635915 |
AT5G43870.2 | 2058 | Chr5: 17632310-17635945 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43860:three_prime_UTR:1 | 154 | Chr5: 17632185-17632338 | Arabidopsis thaliana |
AT5G43870:three_prime_UTR:2 | 1112 | Chr5: 17631426-17632537 | Arabidopsis thaliana |
AT5G43870:three_prime_UTR:1 | 815 | Chr5: 17632310-17633124 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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