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Gene : KCS20 A. thaliana

DB identifier  ? AT5G43760 Secondary Identifier  ? locus:2170837
Name  ? 3-ketoacyl-CoA synthase 20 Brief Description  3-ketoacyl-CoA synthase 20
TAIR Computational Description  3-ketoacyl-CoA synthase 20;(source:Araport11)
TAIR Curator Summary  Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). The mRNA is cell-to-cell mobile.
TAIR Short Description  3-ketoacyl-CoA synthase 20
TAIR Aliases  KCS20

1 Gene Rifs

1 Organism

19 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3211  
Location: Chr5:17585523-17588733

Gene models - KCS20 AT5G43760

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

3 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
KCS20_ARATH function Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26) (PubMed:15277688). Functionally redundant with KCS2 in the two-carbon elongation of C22 fatty acids that is required for cuticular wax and root suberin biosynthesis (PubMed:19619160).
KCS20_ARATH pathway Lipid metabolism; fatty acid biosynthesis.
KCS20_ARATH similarity Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
KCS20_ARATH tissue specificity Expressed in aerial organs (PubMed:15914083). Expressed in leaves, flowers, siliques and stems (PubMed:18465198). Expressed in roots, young seedlings, leaves, flowers and siliques (PubMed:19619160).

1 Proteins

Function

Gene Ontology

cellular component
membrane  ? ECO  
molecular function
fatty acid elongase activity  ? ECO  
biological process
fatty acid biosynthetic process  ? ECO  
response to cold  ? ECO  
response to light stimulus  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets