External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 31, Exons: 18, Five Prime UTRs: 2, mRNAs: 2, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42620:CDS:1 | 63 | Chr5: 17066630-17066692 | Arabidopsis thaliana |
AT5G42620:CDS:2 | 357 | Chr5: 17067008-17067364 | Arabidopsis thaliana |
AT5G42620:CDS:3 | 141 | Chr5: 17067450-17067590 | Arabidopsis thaliana |
AT5G42620:CDS:4 | 133 | Chr5: 17067677-17067809 | Arabidopsis thaliana |
AT5G42620:CDS:5 | 114 | Chr5: 17067907-17068020 | Arabidopsis thaliana |
AT5G42620:CDS:6 | 149 | Chr5: 17068116-17068264 | Arabidopsis thaliana |
AT5G42620:CDS:7 | 93 | Chr5: 17068433-17068525 | Arabidopsis thaliana |
AT5G42620:CDS:8 | 394 | Chr5: 17068643-17069036 | Arabidopsis thaliana |
AT5G42620:CDS:9 | 127 | Chr5: 17069263-17069389 | Arabidopsis thaliana |
AT5G42620:CDS:10 | 100 | Chr5: 17069473-17069572 | Arabidopsis thaliana |
AT5G42620:CDS:11 | 70 | Chr5: 17069812-17069881 | Arabidopsis thaliana |
AT5G42620:CDS:12 | 153 | Chr5: 17069966-17070118 | Arabidopsis thaliana |
AT5G42620:CDS:13 | 96 | Chr5: 17070215-17070310 | Arabidopsis thaliana |
AT5G42620:CDS:14 | 320 | Chr5: 17070396-17070715 | Arabidopsis thaliana |
AT5G42620:CDS:16 | 216 | Chr5: 17070830-17071045 | Arabidopsis thaliana |
AT5G42620:CDS:1.1 | 63 | Chr5: 17066630-17066692 | Arabidopsis thaliana |
AT5G42620:CDS:2.1 | 357 | Chr5: 17067008-17067364 | Arabidopsis thaliana |
AT5G42620:CDS:3.1 | 141 | Chr5: 17067450-17067590 | Arabidopsis thaliana |
AT5G42620:CDS:4.1 | 133 | Chr5: 17067677-17067809 | Arabidopsis thaliana |
AT5G42620:CDS:5.1 | 114 | Chr5: 17067907-17068020 | Arabidopsis thaliana |
AT5G42620:CDS:6.1 | 149 | Chr5: 17068116-17068264 | Arabidopsis thaliana |
AT5G42620:CDS:7.1 | 93 | Chr5: 17068433-17068525 | Arabidopsis thaliana |
AT5G42620:CDS:8.1 | 394 | Chr5: 17068643-17069036 | Arabidopsis thaliana |
AT5G42620:CDS:9.1 | 127 | Chr5: 17069263-17069389 | Arabidopsis thaliana |
AT5G42620:CDS:10.1 | 100 | Chr5: 17069473-17069572 | Arabidopsis thaliana |
AT5G42620:CDS:11.1 | 70 | Chr5: 17069812-17069881 | Arabidopsis thaliana |
AT5G42620:CDS:12.1 | 153 | Chr5: 17069966-17070118 | Arabidopsis thaliana |
AT5G42620:CDS:13.1 | 96 | Chr5: 17070215-17070310 | Arabidopsis thaliana |
AT5G42620:CDS:14.1 | 320 | Chr5: 17070396-17070715 | Arabidopsis thaliana |
AT5G42620:CDS:15 | 211 | Chr5: 17070830-17071040 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42620:exon:1 | 496 | Chr5: 17066197-17066692 | Arabidopsis thaliana |
AT5G42620:exon:17 | 579 | Chr5: 17070830-17071408 | Arabidopsis thaliana |
AT5G42620:exon:2 | 415 | Chr5: 17066278-17066692 | Arabidopsis thaliana |
AT5G42620:exon:3 | 357 | Chr5: 17067008-17067364 | Arabidopsis thaliana |
AT5G42620:exon:4 | 141 | Chr5: 17067450-17067590 | Arabidopsis thaliana |
AT5G42620:exon:5 | 133 | Chr5: 17067677-17067809 | Arabidopsis thaliana |
AT5G42620:exon:6 | 114 | Chr5: 17067907-17068020 | Arabidopsis thaliana |
AT5G42620:exon:7 | 149 | Chr5: 17068116-17068264 | Arabidopsis thaliana |
AT5G42620:exon:8 | 93 | Chr5: 17068433-17068525 | Arabidopsis thaliana |
AT5G42620:exon:9 | 394 | Chr5: 17068643-17069036 | Arabidopsis thaliana |
AT5G42620:exon:10 | 127 | Chr5: 17069263-17069389 | Arabidopsis thaliana |
AT5G42620:exon:11 | 100 | Chr5: 17069473-17069572 | Arabidopsis thaliana |
AT5G42620:exon:12 | 70 | Chr5: 17069812-17069881 | Arabidopsis thaliana |
AT5G42620:exon:13 | 153 | Chr5: 17069966-17070118 | Arabidopsis thaliana |
AT5G42620:exon:14 | 96 | Chr5: 17070215-17070310 | Arabidopsis thaliana |
AT5G42620:exon:15 | 320 | Chr5: 17070396-17070715 | Arabidopsis thaliana |
AT5G42620:exon:16 | 211 | Chr5: 17070830-17071040 | Arabidopsis thaliana |
AT5G42620:exon:18 | 346 | Chr5: 17071618-17071963 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42620:five_prime_UTR:1 | 433 | Chr5: 17066197-17066629 | Arabidopsis thaliana |
AT5G42620:five_prime_UTR:2 | 352 | Chr5: 17066278-17066629 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G42620.1 | 3322 | Chr5: 17066197-17071408 |
AT5G42620.2 | 3219 | Chr5: 17066278-17071963 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42620:three_prime_UTR:1 | 363 | Chr5: 17071046-17071408 | Arabidopsis thaliana |
AT5G42620:three_prime_UTR:2 | 197 | Chr5: 17071767-17071963 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE61635 | 186 | Chr5: 17066071-17066256 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE61635:transposon_fragment:1 | 186 | Chr5: 17066071-17066256 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178U9I5_ARATH F4K306_ARATH | similarity | Belongs to the peptidase M8 family. |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
metal ion binding | ECO |
metalloendopeptidase activity | ECO |
biological process | |
proteolysis | ECO |
cell adhesion | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...