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Gene : AT5G41190 A. thaliana

DB identifier  ? AT5G41190 Secondary Identifier  ? locus:2163071
Brief Description  RNA-binding NOB1-like protein
TAIR Computational Description  RNA-binding NOB1-like protein;(source:Araport11)
TAIR Curator Summary  Encodes a cytoplasmic protein with RNA endonuclease activity. Mutants display aberrant RNA processing and male and female gametophyte development.
TAIR Short Description  NULL
TAIR Aliases  AtNOB1, NOB1

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2636  
Location: Chr5:16487466-16490101 reverse strand

Gene models - AT5G41190 AT5G41190

? Gene models

Transcripts: 1  Exons: 5  Introns: 4 

Overlapping Features

? Genome features that overlap coordinates of this Gene

6 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
NOB1_ARATH function Essential protein required during embryogenesis and pollen development (PubMed:23382868). Endonuclease cleaving pre-rRNA at the 3' end of the mature 18S rRNA (D-site); cleaves 20S pre-rRNA in the cytoplasm (PubMed:23382868). Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits (PubMed:23382868).
NOB1_ARATH similarity Belongs to the NOB1 family.
NOB1_ARATH tissue specificity Highly expressed in flowers and siliques and at lower levels in roots, hypocotyls, stems, leaves and seeds.

1 Proteins

Function

Gene Ontology

cellular component
cytoplasm  ? ECO  
preribosome, small subunit precursor  ? ECO  
nucleoplasm  ? ECO  
molecular function
metal ion binding  ? ECO  
RNA endonuclease activity  ? ECO  
biological process
maturation of SSU-rRNA  ? ECO  
rRNA processing  ? ECO  
embryo sac development  ? ECO  
pollen development  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets