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Gene : UPM1 A. thaliana

DB identifier  ? AT5G40850 Secondary Identifier  ? locus:2164506
Name  ? urophorphyrin methylase 1 Brief Description  urophorphyrin methylase 1
TAIR Computational Description  urophorphyrin methylase 1;(source:Araport11)
TAIR Curator Summary  Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. The mRNA is cell-to-cell mobile.
TAIR Short Description  urophorphyrin methylase 1
TAIR Aliases  AtUPM1, UPM1

0 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3417  
Location: Chr5:16365900-16369316

Gene models - UPM1 AT5G40850

? Gene models

Transcripts: 3  Exons: 17  Introns: 14 

Overlapping Features

? Genome features that overlap coordinates of this Gene

13 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
UPM1_ARATH function Essential protein required for siroheme biosynthesis (PubMed:20592802). Catalyzes the two successive C-2 and C-7 methylation reactions involved in the conversion of uroporphyrinogen III to precorrin-2 via the intermediate formation of precorrin-1 (PubMed:9006913). It is a step in the biosynthesis of siroheme (PubMed:9006913). Promotes nitrogen and sulfur assimilation as well as photosynthesis efficiency by triggering chlorophyll, nitrite reductase (NiR) and sulfite reductase (SiR) biosynthesis (PubMed:29472934).
UPM1_ARATH pathway Porphyrin-containing compound metabolism; siroheme biosynthesis; precorrin-2 from uroporphyrinogen III: step 1/1.
F4KIS7_ARATH UPM1_ARATH A0A1P8BE13_ARATH similarity Belongs to the precorrin methyltransferase family.
UPM1_ARATH tissue specificity Mostly expressed in leaves, and, to a lower extent, in stems, flowers and siliques.

3 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets