External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G39940:CDS:1 | 114 | Chr5: 15987649-15987762 | Arabidopsis thaliana |
AT5G39940:CDS:2 | 135 | Chr5: 15987849-15987983 | Arabidopsis thaliana |
AT5G39940:CDS:3 | 60 | Chr5: 15988069-15988128 | Arabidopsis thaliana |
AT5G39940:CDS:4 | 114 | Chr5: 15988279-15988392 | Arabidopsis thaliana |
AT5G39940:CDS:5 | 88 | Chr5: 15988473-15988560 | Arabidopsis thaliana |
AT5G39940:CDS:6 | 146 | Chr5: 15988649-15988794 | Arabidopsis thaliana |
AT5G39940:CDS:7 | 102 | Chr5: 15988894-15988995 | Arabidopsis thaliana |
AT5G39940:CDS:8 | 72 | Chr5: 15989083-15989154 | Arabidopsis thaliana |
AT5G39940:CDS:9 | 100 | Chr5: 15989248-15989347 | Arabidopsis thaliana |
AT5G39940:CDS:10 | 83 | Chr5: 15989430-15989512 | Arabidopsis thaliana |
AT5G39940:CDS:11 | 78 | Chr5: 15989598-15989675 | Arabidopsis thaliana |
AT5G39940:CDS:12 | 99 | Chr5: 15989767-15989865 | Arabidopsis thaliana |
AT5G39940:CDS:13 | 51 | Chr5: 15989958-15990008 | Arabidopsis thaliana |
AT5G39940:CDS:14 | 57 | Chr5: 15990095-15990151 | Arabidopsis thaliana |
AT5G39940:CDS:16 | 42 | Chr5: 15990313-15990354 | Arabidopsis thaliana |
AT5G39940:CDS:18 | 36 | Chr5: 15990473-15990508 | Arabidopsis thaliana |
AT5G39940:CDS:1.1 | 114 | Chr5: 15987649-15987762 | Arabidopsis thaliana |
AT5G39940:CDS:2.1 | 135 | Chr5: 15987849-15987983 | Arabidopsis thaliana |
AT5G39940:CDS:3.1 | 60 | Chr5: 15988069-15988128 | Arabidopsis thaliana |
AT5G39940:CDS:5.1 | 88 | Chr5: 15988473-15988560 | Arabidopsis thaliana |
AT5G39940:CDS:6.1 | 146 | Chr5: 15988649-15988794 | Arabidopsis thaliana |
AT5G39940:CDS:7.1 | 102 | Chr5: 15988894-15988995 | Arabidopsis thaliana |
AT5G39940:CDS:8.1 | 72 | Chr5: 15989083-15989154 | Arabidopsis thaliana |
AT5G39940:CDS:9.1 | 100 | Chr5: 15989248-15989347 | Arabidopsis thaliana |
AT5G39940:CDS:10.1 | 83 | Chr5: 15989430-15989512 | Arabidopsis thaliana |
AT5G39940:CDS:11.1 | 78 | Chr5: 15989598-15989675 | Arabidopsis thaliana |
AT5G39940:CDS:12.1 | 99 | Chr5: 15989767-15989865 | Arabidopsis thaliana |
AT5G39940:CDS:13.1 | 51 | Chr5: 15989958-15990008 | Arabidopsis thaliana |
AT5G39940:CDS:14.1 | 57 | Chr5: 15990095-15990151 | Arabidopsis thaliana |
AT5G39940:CDS:16.1 | 42 | Chr5: 15990313-15990354 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G39940:exon:20 | 156 | Chr5: 15990473-15990628 | Arabidopsis thaliana |
AT5G39940:exon:1 | 302 | Chr5: 15987461-15987762 | Arabidopsis thaliana |
AT5G39940:exon:16 | 45 | Chr5: 15990107-15990151 | Arabidopsis thaliana |
AT5G39940:exon:18 | 176 | Chr5: 15990460-15990635 | Arabidopsis thaliana |
AT5G39940:exon:2 | 210 | Chr5: 15987553-15987762 | Arabidopsis thaliana |
AT5G39940:exon:3 | 135 | Chr5: 15987849-15987983 | Arabidopsis thaliana |
AT5G39940:exon:4 | 60 | Chr5: 15988069-15988128 | Arabidopsis thaliana |
AT5G39940:exon:5 | 114 | Chr5: 15988279-15988392 | Arabidopsis thaliana |
AT5G39940:exon:6 | 88 | Chr5: 15988473-15988560 | Arabidopsis thaliana |
AT5G39940:exon:7 | 146 | Chr5: 15988649-15988794 | Arabidopsis thaliana |
AT5G39940:exon:8 | 102 | Chr5: 15988894-15988995 | Arabidopsis thaliana |
AT5G39940:exon:9 | 72 | Chr5: 15989083-15989154 | Arabidopsis thaliana |
AT5G39940:exon:10 | 100 | Chr5: 15989248-15989347 | Arabidopsis thaliana |
AT5G39940:exon:11 | 83 | Chr5: 15989430-15989512 | Arabidopsis thaliana |
AT5G39940:exon:12 | 78 | Chr5: 15989598-15989675 | Arabidopsis thaliana |
AT5G39940:exon:13 | 99 | Chr5: 15989767-15989865 | Arabidopsis thaliana |
AT5G39940:exon:14 | 51 | Chr5: 15989958-15990008 | Arabidopsis thaliana |
AT5G39940:exon:15 | 57 | Chr5: 15990095-15990151 | Arabidopsis thaliana |
AT5G39940:exon:17 | 42 | Chr5: 15990313-15990354 | Arabidopsis thaliana |
AT5G39940:exon:19 | 242 | Chr5: 15990460-15990701 | Arabidopsis thaliana |
AT5G39950:exon:3 | 330 | Chr5: 15990687-15991016 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G39940:five_prime_UTR:1 | 188 | Chr5: 15987461-15987648 | Arabidopsis thaliana |
AT5G39940:five_prime_UTR:2 | 96 | Chr5: 15987553-15987648 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G39950 | locus:2178007 | TRX2 | thioredoxin 2 | 1292 | Chr5: 15990687-15991978 | A. thaliana | thioredoxin 2;(source:Araport11) | encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. | thioredoxin 2 | ATH2, ATTRX2, ATTRXH2, TRX2, TRXH2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G39940.2 | 1685 | Chr5: 15987461-15990628 |
AT5G39940.4 | 1571 | Chr5: 15987461-15990628 |
AT5G39940.3 | 1693 | Chr5: 15987461-15990635 |
AT5G39940.1 | 1679 | Chr5: 15987553-15990701 |
AT5G39950.1 | 697 | Chr5: 15990687-15991978 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G39940:three_prime_UTR:1 | 120 | Chr5: 15990509-15990628 | Arabidopsis thaliana |
AT5G39940:three_prime_UTR:2 | 74 | Chr5: 15990562-15990635 | Arabidopsis thaliana |
AT5G39940:three_prime_UTR:3 | 140 | Chr5: 15990562-15990701 | Arabidopsis thaliana |
AT5G39950:three_prime_UTR:1 | 198 | Chr5: 15990687-15990884 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
oxidoreductase activity | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...