External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 27, Exons: 16, Five Prime UTR: 1, Gene: 1, mRNAs: 3, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38680:CDS:2 | 177 | Chr5: 15478864-15479040 | Arabidopsis thaliana |
AT5G38690:CDS:13 | 49 | Chr5: 15479424-15479472 | Arabidopsis thaliana |
AT5G38690:CDS:12 | 97 | Chr5: 15479944-15480040 | Arabidopsis thaliana |
AT5G38690:CDS:11 | 114 | Chr5: 15480121-15480234 | Arabidopsis thaliana |
AT5G38690:CDS:10 | 169 | Chr5: 15480316-15480484 | Arabidopsis thaliana |
AT5G38690:CDS:9 | 91 | Chr5: 15480562-15480652 | Arabidopsis thaliana |
AT5G38690:CDS:8 | 192 | Chr5: 15480734-15480925 | Arabidopsis thaliana |
AT5G38690:CDS:7 | 143 | Chr5: 15481021-15481163 | Arabidopsis thaliana |
AT5G38690:CDS:6 | 206 | Chr5: 15481261-15481466 | Arabidopsis thaliana |
AT5G38690:CDS:5 | 241 | Chr5: 15481554-15481794 | Arabidopsis thaliana |
AT5G38690:CDS:4 | 130 | Chr5: 15481889-15482018 | Arabidopsis thaliana |
AT5G38690:CDS:3 | 87 | Chr5: 15482084-15482170 | Arabidopsis thaliana |
AT5G38690:CDS:2 | 98 | Chr5: 15482262-15482359 | Arabidopsis thaliana |
AT5G38690:CDS:1 | 102 | Chr5: 15482891-15482992 | Arabidopsis thaliana |
AT5G38690:CDS:13.1 | 49 | Chr5: 15479424-15479472 | Arabidopsis thaliana |
AT5G38690:CDS:12.1 | 97 | Chr5: 15479944-15480040 | Arabidopsis thaliana |
AT5G38690:CDS:11.1 | 114 | Chr5: 15480121-15480234 | Arabidopsis thaliana |
AT5G38690:CDS:10.1 | 169 | Chr5: 15480316-15480484 | Arabidopsis thaliana |
AT5G38690:CDS:9.1 | 91 | Chr5: 15480562-15480652 | Arabidopsis thaliana |
AT5G38690:CDS:8.1 | 192 | Chr5: 15480734-15480925 | Arabidopsis thaliana |
AT5G38690:CDS:7.1 | 143 | Chr5: 15481021-15481163 | Arabidopsis thaliana |
AT5G38690:CDS:6.1 | 206 | Chr5: 15481261-15481466 | Arabidopsis thaliana |
AT5G38690:CDS:5.1 | 241 | Chr5: 15481554-15481794 | Arabidopsis thaliana |
AT5G38690:CDS:4.1 | 130 | Chr5: 15481889-15482018 | Arabidopsis thaliana |
AT5G38690:CDS:3.1 | 87 | Chr5: 15482084-15482170 | Arabidopsis thaliana |
AT5G38690:CDS:2.1 | 98 | Chr5: 15482262-15482359 | Arabidopsis thaliana |
AT5G38690:CDS:1.1 | 102 | Chr5: 15482891-15482992 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38680:exon:2 | 177 | Chr5: 15478864-15479040 | Arabidopsis thaliana |
AT5G38690:exon:15 | 412 | Chr5: 15478701-15479112 | Arabidopsis thaliana |
AT5G38690:exon:13 | 107 | Chr5: 15479366-15479472 | Arabidopsis thaliana |
AT5G38690:exon:14 | 772 | Chr5: 15478701-15479472 | Arabidopsis thaliana |
AT5G38690:exon:12 | 97 | Chr5: 15479944-15480040 | Arabidopsis thaliana |
AT5G38690:exon:11 | 114 | Chr5: 15480121-15480234 | Arabidopsis thaliana |
AT5G38690:exon:10 | 169 | Chr5: 15480316-15480484 | Arabidopsis thaliana |
AT5G38690:exon:9 | 91 | Chr5: 15480562-15480652 | Arabidopsis thaliana |
AT5G38690:exon:8 | 192 | Chr5: 15480734-15480925 | Arabidopsis thaliana |
AT5G38690:exon:7 | 143 | Chr5: 15481021-15481163 | Arabidopsis thaliana |
AT5G38690:exon:6 | 206 | Chr5: 15481261-15481466 | Arabidopsis thaliana |
AT5G38690:exon:5 | 241 | Chr5: 15481554-15481794 | Arabidopsis thaliana |
AT5G38690:exon:4 | 130 | Chr5: 15481889-15482018 | Arabidopsis thaliana |
AT5G38690:exon:3 | 87 | Chr5: 15482084-15482170 | Arabidopsis thaliana |
AT5G38690:exon:2 | 98 | Chr5: 15482262-15482359 | Arabidopsis thaliana |
AT5G38690:exon:1 | 360 | Chr5: 15482891-15483250 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38690:five_prime_UTR:1 | 258 | Chr5: 15482993-15483250 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G38680 | locus:2159813 | AT5G38680 | 1717 | Chr5: 15477324-15479040 | A. thaliana | Galactose oxidase/kelch repeat superfamily protein;(source:Araport11) | NULL | Galactose oxidase/kelch repeat superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G38680.1 | 1074 | Chr5: 15477324-15479040 |
AT5G38690.1 | 2447 | Chr5: 15478701-15483250 |
AT5G38690.2 | 2700 | Chr5: 15478701-15483250 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38690:three_prime_UTR:3 | 412 | Chr5: 15478701-15479112 | Arabidopsis thaliana |
AT5G38690:three_prime_UTR:1 | 58 | Chr5: 15479366-15479423 | Arabidopsis thaliana |
AT5G38690:three_prime_UTR:2 | 723 | Chr5: 15478701-15479423 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE56010 | 88 | Chr5: 15483181-15483268 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE56010:transposon_fragment:1 | 88 | Chr5: 15483181-15483268 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
ISWI-type complex | ECO |
cytoplasm | ECO |
molecular function | |
No terms in this category. | |
biological process | |
regulation of DNA-templated transcription | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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