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Gene : LCR80 A. thaliana

DB identifier  ? AT5G38330 Secondary Identifier  ? locus:2173288
Name  ? low-molecular-weight cysteine-rich 80 Brief Description  low-molecular-weight cysteine-rich 80
TAIR Computational Description  low-molecular-weight cysteine-rich 80;(source:Araport11)
TAIR Curator Summary  Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
TAIR Short Description  low-molecular-weight cysteine-rich 80
TAIR Aliases  LCR80

0 Gene Rifs

1 Organism

13 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 829  
Location: Chr5:15317683-15318511

Gene models - LCR80 AT5G38330

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features Displayer

3 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
DF181_ARATH function Confers broad-spectrum resistance to pathogens.
DF181_ARATH similarity Belongs to the DEFL family.

1 Proteins

Function

Gene Ontology

cellular component
extracellular region  ? ECO  
molecular function
No terms in this category.
biological process
defense response  ? ECO  
defense response to fungus  ? ECO  
killing of cells of another organism  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets