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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 15, Exons: 10, Five Prime UTRs: 3, mRNAs: 3, Three Prime UTRs: 4, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38220:CDS:1 | 296 | Chr5: 15269012-15269307 | Arabidopsis thaliana |
AT5G38220:CDS:2 | 37 | Chr5: 15269919-15269955 | Arabidopsis thaliana |
AT5G38220:CDS:3 | 237 | Chr5: 15270064-15270300 | Arabidopsis thaliana |
AT5G38220:CDS:4 | 48 | Chr5: 15270378-15270425 | Arabidopsis thaliana |
AT5G38220:CDS:5 | 393 | Chr5: 15270748-15271140 | Arabidopsis thaliana |
AT5G38220:CDS:1.1 | 296 | Chr5: 15269012-15269307 | Arabidopsis thaliana |
AT5G38220:CDS:2.1 | 37 | Chr5: 15269919-15269955 | Arabidopsis thaliana |
AT5G38220:CDS:3.1 | 237 | Chr5: 15270064-15270300 | Arabidopsis thaliana |
AT5G38220:CDS:4.1 | 48 | Chr5: 15270378-15270425 | Arabidopsis thaliana |
AT5G38220:CDS:6 | 99 | Chr5: 15270758-15270856 | Arabidopsis thaliana |
AT5G38220:CDS:1.2 | 296 | Chr5: 15269012-15269307 | Arabidopsis thaliana |
AT5G38220:CDS:2.2 | 37 | Chr5: 15269919-15269955 | Arabidopsis thaliana |
AT5G38220:CDS:3.2 | 237 | Chr5: 15270064-15270300 | Arabidopsis thaliana |
AT5G38220:CDS:4.2 | 48 | Chr5: 15270378-15270425 | Arabidopsis thaliana |
AT5G38220:CDS:5.1 | 393 | Chr5: 15270748-15271140 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38220:exon:1 | 634 | Chr5: 15268674-15269307 | Arabidopsis thaliana |
AT5G38220:exon:8 | 709 | Chr5: 15270748-15271456 | Arabidopsis thaliana |
AT5G38220:exon:2 | 525 | Chr5: 15268783-15269307 | Arabidopsis thaliana |
AT5G38220:exon:9 | 578 | Chr5: 15270758-15271335 | Arabidopsis thaliana |
AT5G38220:exon:3 | 481 | Chr5: 15268827-15269307 | Arabidopsis thaliana |
AT5G38220:exon:4 | 37 | Chr5: 15269919-15269955 | Arabidopsis thaliana |
AT5G38220:exon:5 | 237 | Chr5: 15270064-15270300 | Arabidopsis thaliana |
AT5G38220:exon:6 | 48 | Chr5: 15270378-15270425 | Arabidopsis thaliana |
AT5G38220:exon:7 | 419 | Chr5: 15270748-15271166 | Arabidopsis thaliana |
AT5G38220:exon:10 | 139 | Chr5: 15271248-15271386 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38220:five_prime_UTR:1 | 338 | Chr5: 15268674-15269011 | Arabidopsis thaliana |
AT5G38220:five_prime_UTR:2 | 229 | Chr5: 15268783-15269011 | Arabidopsis thaliana |
AT5G38220:five_prime_UTR:3 | 185 | Chr5: 15268827-15269011 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G38220.1 | 1665 | Chr5: 15268674-15271456 |
AT5G38220.2 | 1425 | Chr5: 15268783-15271335 |
AT5G38220.3 | 1361 | Chr5: 15268827-15271386 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38220:three_prime_UTR:3 | 316 | Chr5: 15271141-15271456 | Arabidopsis thaliana |
AT5G38220:three_prime_UTR:1 | 479 | Chr5: 15270857-15271335 | Arabidopsis thaliana |
AT5G38220:three_prime_UTR:2 | 26 | Chr5: 15271141-15271166 | Arabidopsis thaliana |
AT5G38220:three_prime_UTR:4 | 139 | Chr5: 15271248-15271386 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE55245 | 231 | Chr5: 15271169-15271399 | Arabidopsis thaliana |
AT5TE55250 | 623 | Chr5: 15271400-15272022 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE55245:transposon_fragment:1 | 231 | Chr5: 15271169-15271399 | Arabidopsis thaliana |
AT5TE55250:transposon_fragment:1 | 623 | Chr5: 15271400-15272022 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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