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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G37370:CDS:10 | 738 | Chr5: 14812845-14813582 | Arabidopsis thaliana |
AT5G37370:CDS:8 | 72 | Chr5: 14814208-14814279 | Arabidopsis thaliana |
AT5G37370:CDS:6 | 81 | Chr5: 14814768-14814848 | Arabidopsis thaliana |
AT5G37370:CDS:1 | 291 | Chr5: 14815698-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:10.1 | 738 | Chr5: 14812845-14813582 | Arabidopsis thaliana |
AT5G37370:CDS:9 | 45 | Chr5: 14814208-14814252 | Arabidopsis thaliana |
AT5G37370:CDS:10.2 | 738 | Chr5: 14812845-14813582 | Arabidopsis thaliana |
AT5G37370:CDS:9.1 | 45 | Chr5: 14814208-14814252 | Arabidopsis thaliana |
AT5G37370:CDS:10.3 | 738 | Chr5: 14812845-14813582 | Arabidopsis thaliana |
AT5G37370:CDS:9.2 | 45 | Chr5: 14814208-14814252 | Arabidopsis thaliana |
AT5G37370:CDS:10.4 | 738 | Chr5: 14812845-14813582 | Arabidopsis thaliana |
AT5G37370:CDS:8.1 | 72 | Chr5: 14814208-14814279 | Arabidopsis thaliana |
AT5G37370:CDS:6.1 | 81 | Chr5: 14814768-14814848 | Arabidopsis thaliana |
AT5G37370:CDS:2 | 126 | Chr5: 14815698-14815823 | Arabidopsis thaliana |
AT5G37370:CDS:10.5 | 738 | Chr5: 14812845-14813582 | Arabidopsis thaliana |
AT5G37370:CDS:7 | 48 | Chr5: 14814232-14814279 | Arabidopsis thaliana |
AT5G37370:CDS:6.2 | 81 | Chr5: 14814768-14814848 | Arabidopsis thaliana |
AT5G37370:CDS:1.1 | 291 | Chr5: 14815698-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:3 | 345 | Chr5: 14815644-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:4 | 3 | Chr5: 14815543-14815545 | Arabidopsis thaliana |
AT5G37370:CDS:1.2 | 291 | Chr5: 14815698-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:5 | 45 | Chr5: 14815239-14815283 | Arabidopsis thaliana |
AT5G37370:CDS:1.3 | 291 | Chr5: 14815698-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:5.1 | 45 | Chr5: 14815239-14815283 | Arabidopsis thaliana |
AT5G37370:CDS:1.4 | 291 | Chr5: 14815698-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:4.1 | 3 | Chr5: 14815543-14815545 | Arabidopsis thaliana |
AT5G37370:CDS:1.5 | 291 | Chr5: 14815698-14815988 | Arabidopsis thaliana |
AT5G37370:CDS:3.1 | 345 | Chr5: 14815644-14815988 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G37370:exon:2 | 161 | Chr5: 14816431-14816591 | Arabidopsis thaliana |
AT5G37370:exon:22 | 1013 | Chr5: 14812570-14813582 | Arabidopsis thaliana |
AT5G37370:exon:15 | 1279 | Chr5: 14814768-14816046 | Arabidopsis thaliana |
AT5G37370:exon:16 | 211 | Chr5: 14814768-14814978 | Arabidopsis thaliana |
AT5G37370:exon:10 | 215 | Chr5: 14814978-14815192 | Arabidopsis thaliana |
AT5G37370:exon:21 | 1008 | Chr5: 14812575-14813582 | Arabidopsis thaliana |
AT5G37370:exon:19 | 72 | Chr5: 14814208-14814279 | Arabidopsis thaliana |
AT5G37370:exon:6 | 146 | Chr5: 14815698-14815843 | Arabidopsis thaliana |
AT5G37370:exon:4 | 109 | Chr5: 14815938-14816046 | Arabidopsis thaliana |
AT5G37370:exon:1 | 198 | Chr5: 14816431-14816628 | Arabidopsis thaliana |
AT5G37370:exon:20 | 898 | Chr5: 14812685-14813582 | Arabidopsis thaliana |
AT5G37370:exon:18 | 48 | Chr5: 14814232-14814279 | Arabidopsis thaliana |
AT5G37370:exon:17 | 81 | Chr5: 14814768-14814848 | Arabidopsis thaliana |
AT5G37370:exon:14 | 23 | Chr5: 14814826-14814848 | Arabidopsis thaliana |
AT5G37370:exon:11 | 720 | Chr5: 14814826-14815545 | Arabidopsis thaliana |
AT5G37370:exon:12 | 458 | Chr5: 14814826-14815283 | Arabidopsis thaliana |
AT5G37370:exon:9 | 112 | Chr5: 14815172-14815283 | Arabidopsis thaliana |
AT5G37370:exon:8 | 374 | Chr5: 14815172-14815545 | Arabidopsis thaliana |
AT5G37370:exon:5 | 349 | Chr5: 14815698-14816046 | Arabidopsis thaliana |
AT5G37370:exon:13 | 227 | Chr5: 14814826-14815052 | Arabidopsis thaliana |
AT5G37370:exon:7 | 875 | Chr5: 14815172-14816046 | Arabidopsis thaliana |
AT5G37370:exon:3 | 90 | Chr5: 14816431-14816520 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G37370:five_prime_UTR:2 | 161 | Chr5: 14816431-14816591 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:8 | 1279 | Chr5: 14814768-14816046 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:9 | 211 | Chr5: 14814768-14814978 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:11 | 27 | Chr5: 14814253-14814279 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:10 | 81 | Chr5: 14814768-14814848 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:7 | 215 | Chr5: 14814978-14815192 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:6 | 20 | Chr5: 14815824-14815843 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:5 | 109 | Chr5: 14815938-14816046 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:1 | 198 | Chr5: 14816431-14816628 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:4 | 58 | Chr5: 14815989-14816046 | Arabidopsis thaliana |
AT5G37370:five_prime_UTR:3 | 90 | Chr5: 14816431-14816520 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G37370.1 | 1676 | Chr5: 14812570-14816591 |
AT5G37370.5 | 2562 | Chr5: 14812570-14816628 |
AT5G37370.7 | 1291 | Chr5: 14812575-14814978 |
AT5G37370.6 | 1376 | Chr5: 14812575-14815192 |
AT5G37370.4 | 1614 | Chr5: 14812575-14816628 |
AT5G37370.2 | 1466 | Chr5: 14812685-14816520 |
AT5G37370.11 | 988 | Chr5: 14814826-14816520 |
AT5G37370.9 | 1159 | Chr5: 14814826-14816520 |
AT5G37370.12 | 897 | Chr5: 14814826-14816520 |
AT5G37370.3 | 778 | Chr5: 14814826-14816520 |
AT5G37370.10 | 1040 | Chr5: 14814826-14816520 |
AT5G37370.8 | 1192 | Chr5: 14814826-14816520 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G37370:three_prime_UTR:10 | 275 | Chr5: 14812570-14812844 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:9 | 270 | Chr5: 14812575-14812844 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:8 | 160 | Chr5: 14812685-14812844 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:7 | 23 | Chr5: 14814826-14814848 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:4 | 717 | Chr5: 14814826-14815542 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:5 | 413 | Chr5: 14814826-14815238 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:3 | 67 | Chr5: 14815172-14815238 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:2 | 371 | Chr5: 14815172-14815542 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:6 | 227 | Chr5: 14814826-14815052 | Arabidopsis thaliana |
AT5G37370:three_prime_UTR:1 | 472 | Chr5: 14815172-14815643 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SRL1_ARATH SRL1_ARATH-2 | function | May be required for pre-mRNA splicing (Probable). Confers salt tolerance to LiCl and NaCl (PubMed:12047626). |
F4K753_ARATH A0A1P8BAH4_ARATH A0A1P8BAH8_ARATH F4K754_ARATH | function | Required for pre-mRNA splicing. |
F4K753_ARATH SRL1_ARATH C0Z324_ARATH SRL1_ARATH-2 A0A1P8BAH4_ARATH A0A1P8BAH8_ARATH F4K754_ARATH | similarity | Belongs to the PRP38 family. |
SRL1_ARATH SRL1_ARATH-2 | tissue specificity | Mostly expressed in siliques and leaves, also present in seedlings, flowers and stems, and, at low levels, in roots. |
Function
Gene Ontology
cellular component | |
---|---|
spliceosomal complex | ECO |
molecular function | |
No terms in this category. | |
biological process | |
RNA splicing | ECO |
mRNA processing | ECO |
response to salt stress | ECO |
response to lithium ion | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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