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Gene : ATSRL1 A. thaliana

DB identifier  ? AT5G37370 Secondary Identifier  ? locus:2169160
Brief Description  PRP38 family protein
TAIR Computational Description  PRP38 family protein;(source:Araport11)
TAIR Curator Summary  encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.
TAIR Short Description  PRP38 family protein
TAIR Aliases  ATSRL1

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4059  
Location: Chr5:14812570-14816628 reverse strand

Gene models - ATSRL1 AT5G37370

? Gene models

Transcripts: 12  Exons: 47  Introns: 35 

Overlapping Features

? Genome features that overlap coordinates of this Gene

34 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SRL1_ARATH SRL1_ARATH-2 function May be required for pre-mRNA splicing (Probable). Confers salt tolerance to LiCl and NaCl (PubMed:12047626).
F4K753_ARATH A0A1P8BAH4_ARATH A0A1P8BAH8_ARATH F4K754_ARATH function Required for pre-mRNA splicing.
F4K753_ARATH SRL1_ARATH C0Z324_ARATH SRL1_ARATH-2 A0A1P8BAH4_ARATH A0A1P8BAH8_ARATH F4K754_ARATH similarity Belongs to the PRP38 family.
SRL1_ARATH SRL1_ARATH-2 tissue specificity Mostly expressed in siliques and leaves, also present in seedlings, flowers and stems, and, at low levels, in roots.

7 Proteins

Function

Gene Ontology

cellular component
spliceosomal complex  ? ECO  
molecular function
No terms in this category.
biological process
RNA splicing  ? ECO  
mRNA processing  ? ECO  
response to salt stress  ? ECO  
response to lithium ion  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets