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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27680:CDS:16 | 297 | Chr5: 9794244-9794540 | Arabidopsis thaliana |
AT5G27680:CDS:15 | 93 | Chr5: 9794650-9794742 | Arabidopsis thaliana |
AT5G27680:CDS:14 | 123 | Chr5: 9794821-9794943 | Arabidopsis thaliana |
AT5G27680:CDS:13 | 88 | Chr5: 9795096-9795183 | Arabidopsis thaliana |
AT5G27680:CDS:12 | 84 | Chr5: 9795263-9795346 | Arabidopsis thaliana |
AT5G27680:CDS:11 | 100 | Chr5: 9795431-9795530 | Arabidopsis thaliana |
AT5G27680:CDS:10 | 64 | Chr5: 9795611-9795674 | Arabidopsis thaliana |
AT5G27680:CDS:9 | 81 | Chr5: 9795786-9795866 | Arabidopsis thaliana |
AT5G27680:CDS:8 | 57 | Chr5: 9796015-9796071 | Arabidopsis thaliana |
AT5G27680:CDS:7 | 182 | Chr5: 9796277-9796458 | Arabidopsis thaliana |
AT5G27680:CDS:6 | 304 | Chr5: 9796793-9797096 | Arabidopsis thaliana |
AT5G27680:CDS:5 | 190 | Chr5: 9797254-9797443 | Arabidopsis thaliana |
AT5G27680:CDS:4 | 111 | Chr5: 9797546-9797656 | Arabidopsis thaliana |
AT5G27680:CDS:3 | 220 | Chr5: 9797745-9797964 | Arabidopsis thaliana |
AT5G27680:CDS:1 | 583 | Chr5: 9798055-9798637 | Arabidopsis thaliana |
AT5G27680:CDS:16.1 | 297 | Chr5: 9794244-9794540 | Arabidopsis thaliana |
AT5G27680:CDS:15.1 | 93 | Chr5: 9794650-9794742 | Arabidopsis thaliana |
AT5G27680:CDS:14.1 | 123 | Chr5: 9794821-9794943 | Arabidopsis thaliana |
AT5G27680:CDS:13.1 | 88 | Chr5: 9795096-9795183 | Arabidopsis thaliana |
AT5G27680:CDS:12.1 | 84 | Chr5: 9795263-9795346 | Arabidopsis thaliana |
AT5G27680:CDS:11.1 | 100 | Chr5: 9795431-9795530 | Arabidopsis thaliana |
AT5G27680:CDS:10.1 | 64 | Chr5: 9795611-9795674 | Arabidopsis thaliana |
AT5G27680:CDS:9.1 | 81 | Chr5: 9795786-9795866 | Arabidopsis thaliana |
AT5G27680:CDS:8.1 | 57 | Chr5: 9796015-9796071 | Arabidopsis thaliana |
AT5G27680:CDS:7.1 | 182 | Chr5: 9796277-9796458 | Arabidopsis thaliana |
AT5G27680:CDS:6.1 | 304 | Chr5: 9796793-9797096 | Arabidopsis thaliana |
AT5G27680:CDS:5.1 | 190 | Chr5: 9797254-9797443 | Arabidopsis thaliana |
AT5G27680:CDS:4.1 | 111 | Chr5: 9797546-9797656 | Arabidopsis thaliana |
AT5G27680:CDS:3.1 | 220 | Chr5: 9797745-9797964 | Arabidopsis thaliana |
AT5G27680:CDS:1.1 | 583 | Chr5: 9798055-9798637 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27680:exon:1 | 364 | Chr5: 9798786-9799149 | Arabidopsis thaliana |
AT5G27680:exon:25 | 796 | Chr5: 9793745-9794540 | Arabidopsis thaliana |
AT5G27680:exon:26 | 384 | Chr5: 9793745-9794128 | Arabidopsis thaliana |
AT5G27680:exon:4 | 1095 | Chr5: 9798055-9799149 | Arabidopsis thaliana |
AT5G27680:exon:24 | 380 | Chr5: 9793749-9794128 | Arabidopsis thaliana |
AT5G27680:exon:6 | 630 | Chr5: 9798055-9798684 | Arabidopsis thaliana |
AT5G27680:exon:2 | 359 | Chr5: 9798786-9799144 | Arabidopsis thaliana |
AT5G27680:exon:23 | 371 | Chr5: 9793758-9794128 | Arabidopsis thaliana |
AT5G27680:exon:14 | 81 | Chr5: 9795786-9795866 | Arabidopsis thaliana |
AT5G27680:exon:7 | 298 | Chr5: 9798055-9798352 | Arabidopsis thaliana |
AT5G27680:exon:3 | 523 | Chr5: 9798439-9798961 | Arabidopsis thaliana |
AT5G27680:exon:22 | 339 | Chr5: 9793790-9794128 | Arabidopsis thaliana |
AT5G27680:exon:21 | 316 | Chr5: 9794225-9794540 | Arabidopsis thaliana |
AT5G27680:exon:20 | 93 | Chr5: 9794650-9794742 | Arabidopsis thaliana |
AT5G27680:exon:19 | 123 | Chr5: 9794821-9794943 | Arabidopsis thaliana |
AT5G27680:exon:18 | 88 | Chr5: 9795096-9795183 | Arabidopsis thaliana |
AT5G27680:exon:17 | 84 | Chr5: 9795263-9795346 | Arabidopsis thaliana |
AT5G27680:exon:16 | 100 | Chr5: 9795431-9795530 | Arabidopsis thaliana |
AT5G27680:exon:15 | 64 | Chr5: 9795611-9795674 | Arabidopsis thaliana |
AT5G27680:exon:13 | 57 | Chr5: 9796015-9796071 | Arabidopsis thaliana |
AT5G27680:exon:12 | 182 | Chr5: 9796277-9796458 | Arabidopsis thaliana |
AT5G27680:exon:11 | 304 | Chr5: 9796793-9797096 | Arabidopsis thaliana |
AT5G27680:exon:10 | 190 | Chr5: 9797254-9797443 | Arabidopsis thaliana |
AT5G27680:exon:9 | 111 | Chr5: 9797546-9797656 | Arabidopsis thaliana |
AT5G27680:exon:8 | 220 | Chr5: 9797745-9797964 | Arabidopsis thaliana |
AT5G27680:exon:5 | 907 | Chr5: 9798055-9798961 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27680:five_prime_UTR:1 | 364 | Chr5: 9798786-9799149 | Arabidopsis thaliana |
AT5G27680:five_prime_UTR:3 | 512 | Chr5: 9798638-9799149 | Arabidopsis thaliana |
AT5G27680:five_prime_UTR:5 | 47 | Chr5: 9798638-9798684 | Arabidopsis thaliana |
AT5G27680:five_prime_UTR:2 | 359 | Chr5: 9798786-9799144 | Arabidopsis thaliana |
AT5G27680:five_prime_UTR:7 | 105 | Chr5: 9798248-9798352 | Arabidopsis thaliana |
AT5G27680:five_prime_UTR:6 | 523 | Chr5: 9798439-9798961 | Arabidopsis thaliana |
AT5G27680:five_prime_UTR:4 | 324 | Chr5: 9798638-9798961 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27680.3 | 3487 | Chr5: 9793745-9799149 |
AT5G27680.2 | 3588 | Chr5: 9793745-9799149 |
AT5G27680.1 | 3492 | Chr5: 9793745-9799149 |
AT5G27680.4 | 3382 | Chr5: 9793749-9799144 |
AT5G27680.5 | 3205 | Chr5: 9793758-9798961 |
AT5G27680.6 | 3178 | Chr5: 9793790-9798961 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27680:three_prime_UTR:5 | 499 | Chr5: 9793745-9794243 | Arabidopsis thaliana |
AT5G27680:three_prime_UTR:6 | 384 | Chr5: 9793745-9794128 | Arabidopsis thaliana |
AT5G27680:three_prime_UTR:4 | 380 | Chr5: 9793749-9794128 | Arabidopsis thaliana |
AT5G27680:three_prime_UTR:3 | 371 | Chr5: 9793758-9794128 | Arabidopsis thaliana |
AT5G27680:three_prime_UTR:2 | 339 | Chr5: 9793790-9794128 | Arabidopsis thaliana |
AT5G27680:three_prime_UTR:1 | 19 | Chr5: 9794225-9794243 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RQSIM_ARATH | function | Plant specific, probable 3'-5' DNA helicase that may play a role in the repair of DNA. |
A0A1P8BBY0_ARATH RQSIM_ARATH A0A1P8BBY3_ARATH | similarity | Belongs to the helicase family. RecQ subfamily. |
RQSIM_ARATH | tissue specificity | Mostly expressed in roots and seedlings, and, to a lower extent, in leaves, shoots, shoot apical mersitem, inflorescences, flowers, siliques and seeds. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
ATP binding | ECO |
ATP hydrolysis activity | ECO |
isomerase activity | ECO |
DNA binding | ECO |
3'-5' DNA helicase activity | ECO |
metal ion binding | ECO |
biological process | |
DNA repair | ECO |
DNA recombination | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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