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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27560:CDS:1 | 269 | Chr5: 9731758-9732026 | Arabidopsis thaliana |
AT5G27560:CDS:2 | 88 | Chr5: 9732223-9732310 | Arabidopsis thaliana |
AT5G27560:CDS:3 | 114 | Chr5: 9732406-9732519 | Arabidopsis thaliana |
AT5G27560:CDS:4 | 83 | Chr5: 9732605-9732687 | Arabidopsis thaliana |
AT5G27560:CDS:5 | 115 | Chr5: 9732777-9732891 | Arabidopsis thaliana |
AT5G27560:CDS:6 | 92 | Chr5: 9732981-9733072 | Arabidopsis thaliana |
AT5G27560:CDS:7 | 66 | Chr5: 9733156-9733221 | Arabidopsis thaliana |
AT5G27560:CDS:8 | 94 | Chr5: 9733321-9733414 | Arabidopsis thaliana |
AT5G27560:CDS:10 | 105 | Chr5: 9733540-9733644 | Arabidopsis thaliana |
AT5G27560:CDS:1.1 | 269 | Chr5: 9731758-9732026 | Arabidopsis thaliana |
AT5G27560:CDS:2.1 | 88 | Chr5: 9732223-9732310 | Arabidopsis thaliana |
AT5G27560:CDS:3.1 | 114 | Chr5: 9732406-9732519 | Arabidopsis thaliana |
AT5G27560:CDS:4.1 | 83 | Chr5: 9732605-9732687 | Arabidopsis thaliana |
AT5G27560:CDS:5.1 | 115 | Chr5: 9732777-9732891 | Arabidopsis thaliana |
AT5G27560:CDS:6.1 | 92 | Chr5: 9732981-9733072 | Arabidopsis thaliana |
AT5G27560:CDS:7.1 | 66 | Chr5: 9733156-9733221 | Arabidopsis thaliana |
AT5G27560:CDS:8.1 | 94 | Chr5: 9733321-9733414 | Arabidopsis thaliana |
AT5G27560:CDS:9 | 86 | Chr5: 9733540-9733625 | Arabidopsis thaliana |
AT5G27560:CDS:11 | 13 | Chr5: 9734122-9734134 | Arabidopsis thaliana |
AT5G27560:CDS:1.2 | 269 | Chr5: 9731758-9732026 | Arabidopsis thaliana |
AT5G27560:CDS:2.2 | 88 | Chr5: 9732223-9732310 | Arabidopsis thaliana |
AT5G27560:CDS:3.2 | 114 | Chr5: 9732406-9732519 | Arabidopsis thaliana |
AT5G27560:CDS:4.2 | 83 | Chr5: 9732605-9732687 | Arabidopsis thaliana |
AT5G27560:CDS:5.2 | 115 | Chr5: 9732777-9732891 | Arabidopsis thaliana |
AT5G27560:CDS:6.2 | 92 | Chr5: 9732981-9733072 | Arabidopsis thaliana |
AT5G27560:CDS:7.2 | 66 | Chr5: 9733156-9733221 | Arabidopsis thaliana |
AT5G27560:CDS:8.2 | 94 | Chr5: 9733321-9733414 | Arabidopsis thaliana |
AT5G27560:CDS:10.1 | 105 | Chr5: 9733540-9733644 | Arabidopsis thaliana |
AT5G27560:CDS:1.3 | 269 | Chr5: 9731758-9732026 | Arabidopsis thaliana |
AT5G27560:CDS:2.3 | 88 | Chr5: 9732223-9732310 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27550:exon:1 | 47 | Chr5: 9731512-9731558 | Arabidopsis thaliana |
AT5G27550:exon:2 | 245 | Chr5: 9731314-9731558 | Arabidopsis thaliana |
AT5G27560:exon:13 | 478 | Chr5: 9733540-9734017 | Arabidopsis thaliana |
AT5G27560:exon:1 | 515 | Chr5: 9731512-9732026 | Arabidopsis thaliana |
AT5G27560:exon:12 | 86 | Chr5: 9733540-9733625 | Arabidopsis thaliana |
AT5G27560:exon:16 | 352 | Chr5: 9734122-9734473 | Arabidopsis thaliana |
AT5G27560:exon:2 | 77 | Chr5: 9731556-9731632 | Arabidopsis thaliana |
AT5G27560:exon:4 | 278 | Chr5: 9731749-9732026 | Arabidopsis thaliana |
AT5G27560:exon:3 | 471 | Chr5: 9731556-9732026 | Arabidopsis thaliana |
AT5G27560:exon:5 | 88 | Chr5: 9732223-9732310 | Arabidopsis thaliana |
AT5G27560:exon:6 | 114 | Chr5: 9732406-9732519 | Arabidopsis thaliana |
AT5G27560:exon:7 | 83 | Chr5: 9732605-9732687 | Arabidopsis thaliana |
AT5G27560:exon:8 | 115 | Chr5: 9732777-9732891 | Arabidopsis thaliana |
AT5G27560:exon:9 | 92 | Chr5: 9732981-9733072 | Arabidopsis thaliana |
AT5G27560:exon:10 | 66 | Chr5: 9733156-9733221 | Arabidopsis thaliana |
AT5G27560:exon:11 | 94 | Chr5: 9733321-9733414 | Arabidopsis thaliana |
AT5G27560:exon:14 | 482 | Chr5: 9733540-9734021 | Arabidopsis thaliana |
AT5G27560:exon:15 | 222 | Chr5: 9734122-9734343 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27550:five_prime_UTR:1 | 47 | Chr5: 9731512-9731558 | Arabidopsis thaliana |
AT5G27550:five_prime_UTR:2 | 235 | Chr5: 9731324-9731558 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:1 | 246 | Chr5: 9731512-9731757 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:2 | 77 | Chr5: 9731556-9731632 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:4 | 9 | Chr5: 9731749-9731757 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:3 | 202 | Chr5: 9731556-9731757 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27550 | locus:2143616 | AT5G27550 | 4105 | Chr5: 9727454-9731558 | A. thaliana | P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) | NULL | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27550.1 | 2571 | Chr5: 9727454-9731558 |
AT5G27550.2 | 2533 | Chr5: 9727634-9731558 |
AT5G27560.1 | 1645 | Chr5: 9731512-9734017 |
AT5G27560.2 | 1605 | Chr5: 9731512-9734473 |
AT5G27560.4 | 1711 | Chr5: 9731556-9734343 |
AT5G27560.3 | 1827 | Chr5: 9731556-9734343 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27560:three_prime_UTR:1 | 373 | Chr5: 9733645-9734017 | Arabidopsis thaliana |
AT5G27560:three_prime_UTR:4 | 339 | Chr5: 9734135-9734473 | Arabidopsis thaliana |
AT5G27560:three_prime_UTR:2 | 377 | Chr5: 9733645-9734021 | Arabidopsis thaliana |
AT5G27560:three_prime_UTR:3 | 222 | Chr5: 9734122-9734343 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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