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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27550:CDS:12 | 756 | Chr5: 9727634-9728389 | Arabidopsis thaliana |
AT5G27550:CDS:11 | 114 | Chr5: 9728462-9728575 | Arabidopsis thaliana |
AT5G27550:CDS:10 | 164 | Chr5: 9728661-9728824 | Arabidopsis thaliana |
AT5G27550:CDS:9 | 38 | Chr5: 9728932-9728969 | Arabidopsis thaliana |
AT5G27550:CDS:8 | 216 | Chr5: 9729070-9729285 | Arabidopsis thaliana |
AT5G27550:CDS:7 | 162 | Chr5: 9729373-9729534 | Arabidopsis thaliana |
AT5G27550:CDS:6 | 280 | Chr5: 9729637-9729916 | Arabidopsis thaliana |
AT5G27550:CDS:5 | 264 | Chr5: 9730017-9730280 | Arabidopsis thaliana |
AT5G27550:CDS:4 | 100 | Chr5: 9730379-9730478 | Arabidopsis thaliana |
AT5G27550:CDS:3 | 110 | Chr5: 9730651-9730760 | Arabidopsis thaliana |
AT5G27550:CDS:2 | 84 | Chr5: 9731111-9731194 | Arabidopsis thaliana |
AT5G27550:CDS:1 | 10 | Chr5: 9731314-9731323 | Arabidopsis thaliana |
AT5G27550:CDS:12.1 | 756 | Chr5: 9727634-9728389 | Arabidopsis thaliana |
AT5G27550:CDS:11.1 | 114 | Chr5: 9728462-9728575 | Arabidopsis thaliana |
AT5G27550:CDS:10.1 | 164 | Chr5: 9728661-9728824 | Arabidopsis thaliana |
AT5G27550:CDS:9.1 | 38 | Chr5: 9728932-9728969 | Arabidopsis thaliana |
AT5G27550:CDS:8.1 | 216 | Chr5: 9729070-9729285 | Arabidopsis thaliana |
AT5G27550:CDS:7.1 | 162 | Chr5: 9729373-9729534 | Arabidopsis thaliana |
AT5G27550:CDS:6.1 | 280 | Chr5: 9729637-9729916 | Arabidopsis thaliana |
AT5G27550:CDS:5.1 | 264 | Chr5: 9730017-9730280 | Arabidopsis thaliana |
AT5G27550:CDS:4.1 | 100 | Chr5: 9730379-9730478 | Arabidopsis thaliana |
AT5G27550:CDS:3.1 | 110 | Chr5: 9730651-9730760 | Arabidopsis thaliana |
AT5G27550:CDS:2.1 | 84 | Chr5: 9731111-9731194 | Arabidopsis thaliana |
AT5G27550:CDS:1.1 | 10 | Chr5: 9731314-9731323 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27540:exon:16 | 416 | Chr5: 9727039-9727454 | Arabidopsis thaliana |
AT5G27550:exon:15 | 936 | Chr5: 9727454-9728389 | Arabidopsis thaliana |
AT5G27550:exon:3 | 56 | Chr5: 9731314-9731369 | Arabidopsis thaliana |
AT5G27550:exon:1 | 47 | Chr5: 9731512-9731558 | Arabidopsis thaliana |
AT5G27550:exon:14 | 756 | Chr5: 9727634-9728389 | Arabidopsis thaliana |
AT5G27550:exon:13 | 114 | Chr5: 9728462-9728575 | Arabidopsis thaliana |
AT5G27550:exon:12 | 164 | Chr5: 9728661-9728824 | Arabidopsis thaliana |
AT5G27550:exon:11 | 38 | Chr5: 9728932-9728969 | Arabidopsis thaliana |
AT5G27550:exon:10 | 216 | Chr5: 9729070-9729285 | Arabidopsis thaliana |
AT5G27550:exon:9 | 162 | Chr5: 9729373-9729534 | Arabidopsis thaliana |
AT5G27550:exon:8 | 280 | Chr5: 9729637-9729916 | Arabidopsis thaliana |
AT5G27550:exon:7 | 264 | Chr5: 9730017-9730280 | Arabidopsis thaliana |
AT5G27550:exon:6 | 100 | Chr5: 9730379-9730478 | Arabidopsis thaliana |
AT5G27550:exon:5 | 110 | Chr5: 9730651-9730760 | Arabidopsis thaliana |
AT5G27550:exon:4 | 84 | Chr5: 9731111-9731194 | Arabidopsis thaliana |
AT5G27550:exon:2 | 245 | Chr5: 9731314-9731558 | Arabidopsis thaliana |
AT5G27560:exon:1 | 515 | Chr5: 9731512-9732026 | Arabidopsis thaliana |
AT5G27560:exon:2 | 77 | Chr5: 9731556-9731632 | Arabidopsis thaliana |
AT5G27560:exon:3 | 471 | Chr5: 9731556-9732026 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27550:five_prime_UTR:3 | 46 | Chr5: 9731324-9731369 | Arabidopsis thaliana |
AT5G27550:five_prime_UTR:1 | 47 | Chr5: 9731512-9731558 | Arabidopsis thaliana |
AT5G27550:five_prime_UTR:2 | 235 | Chr5: 9731324-9731558 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:1 | 246 | Chr5: 9731512-9731757 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:2 | 77 | Chr5: 9731556-9731632 | Arabidopsis thaliana |
AT5G27560:five_prime_UTR:3 | 202 | Chr5: 9731556-9731757 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27540 | locus:2146385 | MIRO1 | MIRO-related GTP-ase 1 | 5039 | Chr5: 9722416-9727454 | A. thaliana | MIRO-related GTP-ase 1;(source:Araport11) | Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development. | MIRO-related GTP-ase 1 | emb2473, MIRO1 |
AT5G27560 | locus:2143626 | AT5G27560 | 2962 | Chr5: 9731512-9734473 | A. thaliana | DUF1995 domain protein, putative (DUF1995);(source:Araport11) | NULL | Domain of unknown function (DUF1995) |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27540.2 | 2502 | Chr5: 9722416-9727454 |
AT5G27540.1 | 2461 | Chr5: 9722416-9727454 |
AT5G27550.1 | 2571 | Chr5: 9727454-9731558 |
AT5G27550.2 | 2533 | Chr5: 9727634-9731558 |
AT5G27560.1 | 1645 | Chr5: 9731512-9734017 |
AT5G27560.2 | 1605 | Chr5: 9731512-9734473 |
AT5G27560.4 | 1711 | Chr5: 9731556-9734343 |
AT5G27560.3 | 1827 | Chr5: 9731556-9734343 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27540:three_prime_UTR:1 | 342 | Chr5: 9727113-9727454 | Arabidopsis thaliana |
AT5G27550:three_prime_UTR:1 | 180 | Chr5: 9727454-9727633 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
KN14S_ARATH | similarity | Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIN-14 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
microtubule | ECO |
molecular function | |
ATP binding | ECO |
microtubule binding | ECO |
microtubule motor activity | ECO |
biological process | |
microtubule-based movement | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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