External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27400:CDS:1 | 95 | Chr5: 9676362-9676456 | Arabidopsis thaliana |
AT5G27400:CDS:2 | 67 | Chr5: 9676548-9676614 | Arabidopsis thaliana |
AT5G27400:CDS:3 | 129 | Chr5: 9676771-9676899 | Arabidopsis thaliana |
AT5G27400:CDS:4 | 64 | Chr5: 9676987-9677050 | Arabidopsis thaliana |
AT5G27400:CDS:5 | 88 | Chr5: 9677137-9677224 | Arabidopsis thaliana |
AT5G27400:CDS:6 | 85 | Chr5: 9677303-9677387 | Arabidopsis thaliana |
AT5G27400:CDS:7 | 57 | Chr5: 9677463-9677519 | Arabidopsis thaliana |
AT5G27400:CDS:8 | 117 | Chr5: 9677600-9677716 | Arabidopsis thaliana |
AT5G27400:CDS:9 | 74 | Chr5: 9677809-9677882 | Arabidopsis thaliana |
AT5G27400:CDS:10 | 334 | Chr5: 9677952-9678285 | Arabidopsis thaliana |
AT5G27410:CDS:1 | 95 | Chr5: 9676362-9676456 | Arabidopsis thaliana |
AT5G27410:CDS:2 | 67 | Chr5: 9676548-9676614 | Arabidopsis thaliana |
AT5G27410:CDS:3 | 129 | Chr5: 9676771-9676899 | Arabidopsis thaliana |
AT5G27410:CDS:4 | 64 | Chr5: 9676987-9677050 | Arabidopsis thaliana |
AT5G27410:CDS:5 | 88 | Chr5: 9677137-9677224 | Arabidopsis thaliana |
AT5G27410:CDS:6 | 85 | Chr5: 9677303-9677387 | Arabidopsis thaliana |
AT5G27410:CDS:7 | 57 | Chr5: 9677463-9677519 | Arabidopsis thaliana |
AT5G27410:CDS:8 | 117 | Chr5: 9677600-9677716 | Arabidopsis thaliana |
AT5G27410:CDS:9 | 74 | Chr5: 9677809-9677882 | Arabidopsis thaliana |
AT5G27410:CDS:10 | 288 | Chr5: 9677952-9678239 | Arabidopsis thaliana |
AT5G27410:CDS:11 | 136 | Chr5: 9678754-9678889 | Arabidopsis thaliana |
AT5G27410:CDS:13 | 99 | Chr5: 9679240-9679338 | Arabidopsis thaliana |
AT5G27410:CDS:14 | 72 | Chr5: 9679408-9679479 | Arabidopsis thaliana |
AT5G27410:CDS:15 | 93 | Chr5: 9679578-9679670 | Arabidopsis thaliana |
AT5G27410:CDS:17 | 138 | Chr5: 9679814-9679951 | Arabidopsis thaliana |
AT5G27410:CDS:18 | 59 | Chr5: 9680043-9680101 | Arabidopsis thaliana |
AT5G27410:CDS:19 | 103 | Chr5: 9680192-9680294 | Arabidopsis thaliana |
AT5G27410:CDS:20 | 189 | Chr5: 9680378-9680566 | Arabidopsis thaliana |
AT5G27410:CDS:21 | 101 | Chr5: 9680652-9680752 | Arabidopsis thaliana |
AT5G27410:CDS:22 | 55 | Chr5: 9680822-9680876 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27400:exon:1 | 123 | Chr5: 9676334-9676456 | Arabidopsis thaliana |
AT5G27400:exon:2 | 67 | Chr5: 9676548-9676614 | Arabidopsis thaliana |
AT5G27400:exon:3 | 129 | Chr5: 9676771-9676899 | Arabidopsis thaliana |
AT5G27400:exon:4 | 64 | Chr5: 9676987-9677050 | Arabidopsis thaliana |
AT5G27400:exon:5 | 88 | Chr5: 9677137-9677224 | Arabidopsis thaliana |
AT5G27400:exon:6 | 85 | Chr5: 9677303-9677387 | Arabidopsis thaliana |
AT5G27400:exon:7 | 57 | Chr5: 9677463-9677519 | Arabidopsis thaliana |
AT5G27400:exon:8 | 117 | Chr5: 9677600-9677716 | Arabidopsis thaliana |
AT5G27400:exon:9 | 74 | Chr5: 9677809-9677882 | Arabidopsis thaliana |
AT5G27400:exon:10 | 552 | Chr5: 9677952-9678503 | Arabidopsis thaliana |
AT5G27410:exon:1 | 123 | Chr5: 9676334-9676456 | Arabidopsis thaliana |
AT5G27410:exon:2 | 67 | Chr5: 9676548-9676614 | Arabidopsis thaliana |
AT5G27410:exon:3 | 129 | Chr5: 9676771-9676899 | Arabidopsis thaliana |
AT5G27410:exon:4 | 64 | Chr5: 9676987-9677050 | Arabidopsis thaliana |
AT5G27410:exon:5 | 88 | Chr5: 9677137-9677224 | Arabidopsis thaliana |
AT5G27410:exon:6 | 85 | Chr5: 9677303-9677387 | Arabidopsis thaliana |
AT5G27410:exon:7 | 57 | Chr5: 9677463-9677519 | Arabidopsis thaliana |
AT5G27410:exon:8 | 117 | Chr5: 9677600-9677716 | Arabidopsis thaliana |
AT5G27410:exon:9 | 74 | Chr5: 9677809-9677882 | Arabidopsis thaliana |
AT5G27410:exon:10 | 288 | Chr5: 9677952-9678239 | Arabidopsis thaliana |
AT5G27410:exon:13 | 136 | Chr5: 9678754-9678889 | Arabidopsis thaliana |
AT5G27410:exon:11 | 231 | Chr5: 9678659-9678889 | Arabidopsis thaliana |
AT5G27410:exon:12 | 224 | Chr5: 9678666-9678889 | Arabidopsis thaliana |
AT5G27410:exon:14 | 99 | Chr5: 9679240-9679338 | Arabidopsis thaliana |
AT5G27410:exon:15 | 72 | Chr5: 9679408-9679479 | Arabidopsis thaliana |
AT5G27410:exon:16 | 93 | Chr5: 9679578-9679670 | Arabidopsis thaliana |
AT5G27410:exon:18 | 138 | Chr5: 9679814-9679951 | Arabidopsis thaliana |
AT5G27410:exon:31 | 197 | Chr5: 9681991-9682187 | Arabidopsis thaliana |
AT5G27410:exon:17 | 211 | Chr5: 9679741-9679951 | Arabidopsis thaliana |
AT5G27410:exon:19 | 59 | Chr5: 9680043-9680101 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27400:five_prime_UTR:1 | 28 | Chr5: 9676334-9676361 | Arabidopsis thaliana |
AT5G27410:five_prime_UTR:1 | 28 | Chr5: 9676334-9676361 | Arabidopsis thaliana |
AT5G27410:five_prime_UTR:2 | 162 | Chr5: 9678659-9678820 | Arabidopsis thaliana |
AT5G27410:five_prime_UTR:3 | 155 | Chr5: 9678666-9678820 | Arabidopsis thaliana |
AT5G27410:five_prime_UTR:4 | 4 | Chr5: 9679741-9679744 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27400 | locus:2146430 | AT5G27400 | 2170 | Chr5: 9676334-9678503 | A. thaliana | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT5G27410.2). Note that the At5g27410.2 gene model (TAIR10) of the adjacent locus has been obsoleted due to the lack of experimental support. | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27400.1 | 1356 | Chr5: 9676334-9678503 |
AT5G27410.2 | 3153 | Chr5: 9676334-9682940 |
AT5G27410.1 | 2156 | Chr5: 9678659-9682940 |
AT5G27410.3 | 2229 | Chr5: 9678666-9682940 |
AT5G27410.4 | 1734 | Chr5: 9679741-9682940 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27400:three_prime_UTR:1 | 218 | Chr5: 9678286-9678503 | Arabidopsis thaliana |
AT5G27410:three_prime_UTR:1 | 95 | Chr5: 9682093-9682187 | Arabidopsis thaliana |
AT5G27410:three_prime_UTR:2 | 166 | Chr5: 9682319-9682484 | Arabidopsis thaliana |
AT5G27410:three_prime_UTR:3 | 16 | Chr5: 9682469-9682484 | Arabidopsis thaliana |
AT5G27410:three_prime_UTR:4 | 298 | Chr5: 9682643-9682940 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8BAA6_ARATH A0A1P8BAB8_ARATH F4K4A7_ARATH BCAL2_ARATH | similarity | Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
catalytic activity | ECO |
biological process | |
carboxylic acid biosynthetic process | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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