External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G25560:CDS:1 | 185 | Chr5: 8899486-8899670 | Arabidopsis thaliana |
AT5G25560:CDS:2 | 88 | Chr5: 8899746-8899833 | Arabidopsis thaliana |
AT5G25560:CDS:4 | 60 | Chr5: 8899937-8899996 | Arabidopsis thaliana |
AT5G25560:CDS:6 | 33 | Chr5: 8900085-8900117 | Arabidopsis thaliana |
AT5G25560:CDS:7 | 78 | Chr5: 8900223-8900300 | Arabidopsis thaliana |
AT5G25560:CDS:8 | 44 | Chr5: 8900443-8900486 | Arabidopsis thaliana |
AT5G25560:CDS:9 | 41 | Chr5: 8900581-8900621 | Arabidopsis thaliana |
AT5G25560:CDS:10 | 83 | Chr5: 8900730-8900812 | Arabidopsis thaliana |
AT5G25560:CDS:11 | 92 | Chr5: 8900906-8900997 | Arabidopsis thaliana |
AT5G25560:CDS:12 | 112 | Chr5: 8901086-8901197 | Arabidopsis thaliana |
AT5G25560:CDS:13 | 111 | Chr5: 8901281-8901391 | Arabidopsis thaliana |
AT5G25560:CDS:1.1 | 185 | Chr5: 8899486-8899670 | Arabidopsis thaliana |
AT5G25560:CDS:2.1 | 88 | Chr5: 8899746-8899833 | Arabidopsis thaliana |
AT5G25560:CDS:4.1 | 60 | Chr5: 8899937-8899996 | Arabidopsis thaliana |
AT5G25560:CDS:6.1 | 33 | Chr5: 8900085-8900117 | Arabidopsis thaliana |
AT5G25560:CDS:7.1 | 78 | Chr5: 8900223-8900300 | Arabidopsis thaliana |
AT5G25560:CDS:8.1 | 44 | Chr5: 8900443-8900486 | Arabidopsis thaliana |
AT5G25560:CDS:9.1 | 41 | Chr5: 8900581-8900621 | Arabidopsis thaliana |
AT5G25560:CDS:10.1 | 83 | Chr5: 8900730-8900812 | Arabidopsis thaliana |
AT5G25560:CDS:11.1 | 92 | Chr5: 8900906-8900997 | Arabidopsis thaliana |
AT5G25560:CDS:12.1 | 112 | Chr5: 8901086-8901197 | Arabidopsis thaliana |
AT5G25560:CDS:13.1 | 111 | Chr5: 8901281-8901391 | Arabidopsis thaliana |
AT5G25560:CDS:1.2 | 185 | Chr5: 8899486-8899670 | Arabidopsis thaliana |
AT5G25560:CDS:3 | 73 | Chr5: 8899761-8899833 | Arabidopsis thaliana |
AT5G25560:CDS:4.2 | 60 | Chr5: 8899937-8899996 | Arabidopsis thaliana |
AT5G25560:CDS:6.2 | 33 | Chr5: 8900085-8900117 | Arabidopsis thaliana |
AT5G25560:CDS:7.2 | 78 | Chr5: 8900223-8900300 | Arabidopsis thaliana |
AT5G25560:CDS:8.2 | 44 | Chr5: 8900443-8900486 | Arabidopsis thaliana |
AT5G25560:CDS:9.2 | 41 | Chr5: 8900581-8900621 | Arabidopsis thaliana |
AT5G25560:CDS:10.2 | 83 | Chr5: 8900730-8900812 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G25560:exon:1 | 287 | Chr5: 8897797-8898083 | Arabidopsis thaliana |
AT5G25560:exon:6 | 803 | Chr5: 8898181-8898983 | Arabidopsis thaliana |
AT5G25560:exon:2 | 1187 | Chr5: 8897797-8898983 | Arabidopsis thaliana |
AT5G25560:exon:8 | 577 | Chr5: 8899094-8899670 | Arabidopsis thaliana |
AT5G25560:exon:11 | 73 | Chr5: 8899761-8899833 | Arabidopsis thaliana |
AT5G25560:exon:22 | 454 | Chr5: 8901281-8901734 | Arabidopsis thaliana |
AT5G25560:exon:3 | 219 | Chr5: 8897804-8898022 | Arabidopsis thaliana |
AT5G25560:exon:4 | 1821 | Chr5: 8897850-8899670 | Arabidopsis thaliana |
AT5G25560:exon:14 | 33 | Chr5: 8900085-8900117 | Arabidopsis thaliana |
AT5G25560:exon:23 | 460 | Chr5: 8901281-8901740 | Arabidopsis thaliana |
AT5G25560:exon:5 | 213 | Chr5: 8897871-8898083 | Arabidopsis thaliana |
AT5G25560:exon:7 | 174 | Chr5: 8898188-8898361 | Arabidopsis thaliana |
AT5G25560:exon:9 | 245 | Chr5: 8899426-8899670 | Arabidopsis thaliana |
AT5G25560:exon:10 | 88 | Chr5: 8899746-8899833 | Arabidopsis thaliana |
AT5G25560:exon:12 | 60 | Chr5: 8899937-8899996 | Arabidopsis thaliana |
AT5G25560:exon:13 | 63 | Chr5: 8900055-8900117 | Arabidopsis thaliana |
AT5G25560:exon:15 | 78 | Chr5: 8900223-8900300 | Arabidopsis thaliana |
AT5G25560:exon:16 | 44 | Chr5: 8900443-8900486 | Arabidopsis thaliana |
AT5G25560:exon:17 | 41 | Chr5: 8900581-8900621 | Arabidopsis thaliana |
AT5G25560:exon:18 | 83 | Chr5: 8900730-8900812 | Arabidopsis thaliana |
AT5G25560:exon:19 | 92 | Chr5: 8900906-8900997 | Arabidopsis thaliana |
AT5G25560:exon:20 | 112 | Chr5: 8901086-8901197 | Arabidopsis thaliana |
AT5G25560:exon:21 | 429 | Chr5: 8901281-8901709 | Arabidopsis thaliana |
AT5G25570:exon:1 | 186 | Chr5: 8901740-8901925 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G25560:five_prime_UTR:1 | 287 | Chr5: 8897797-8898083 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:6 | 803 | Chr5: 8898181-8898983 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:2 | 1187 | Chr5: 8897797-8898983 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:8 | 392 | Chr5: 8899094-8899485 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:3 | 219 | Chr5: 8897804-8898022 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:4 | 1636 | Chr5: 8897850-8899485 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:5 | 213 | Chr5: 8897871-8898083 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:7 | 174 | Chr5: 8898188-8898361 | Arabidopsis thaliana |
AT5G25560:five_prime_UTR:9 | 60 | Chr5: 8899426-8899485 | Arabidopsis thaliana |
AT5G25570:five_prime_UTR:1 | 92 | Chr5: 8901740-8901831 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G25570 | locus:2179484 | AT5G25570 | 1480 | Chr5: 8901740-8903219 | A. thaliana | polyamine-modulated factor 1-binding protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G25560.2 | 2752 | Chr5: 8897797-8901734 |
AT5G25560.5 | 2849 | Chr5: 8897797-8901734 |
AT5G25560.4 | 2834 | Chr5: 8897797-8901734 |
AT5G25560.1 | 1524 | Chr5: 8897804-8901709 |
AT5G25560.6 | 2912 | Chr5: 8897850-8901740 |
AT5G25560.3 | 1722 | Chr5: 8897871-8901709 |
AT5G25570.2 | 629 | Chr5: 8901740-8903216 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G25560:three_prime_UTR:2 | 343 | Chr5: 8901392-8901734 | Arabidopsis thaliana |
AT5G25560:three_prime_UTR:3 | 349 | Chr5: 8901392-8901740 | Arabidopsis thaliana |
AT5G25560:three_prime_UTR:1 | 318 | Chr5: 8901392-8901709 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
zinc ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...