Lists
This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 153, Exons: 28, Five Prime UTRs: 6, Genes: 2, mRNAs: 13, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24630:CDS:20 | 99 | Chr5: 8432523-8432621 | Arabidopsis thaliana |
AT5G24630:CDS:19 | 146 | Chr5: 8432713-8432858 | Arabidopsis thaliana |
AT5G24630:CDS:18 | 76 | Chr5: 8432991-8433066 | Arabidopsis thaliana |
AT5G24630:CDS:17 | 27 | Chr5: 8433249-8433275 | Arabidopsis thaliana |
AT5G24630:CDS:16 | 47 | Chr5: 8433361-8433407 | Arabidopsis thaliana |
AT5G24630:CDS:15 | 109 | Chr5: 8433677-8433785 | Arabidopsis thaliana |
AT5G24630:CDS:14 | 54 | Chr5: 8433956-8434009 | Arabidopsis thaliana |
AT5G24630:CDS:11 | 77 | Chr5: 8434086-8434162 | Arabidopsis thaliana |
AT5G24630:CDS:8 | 126 | Chr5: 8434236-8434361 | Arabidopsis thaliana |
AT5G24630:CDS:6 | 232 | Chr5: 8434440-8434671 | Arabidopsis thaliana |
AT5G24630:CDS:4 | 62 | Chr5: 8435056-8435117 | Arabidopsis thaliana |
AT5G24630:CDS:2 | 247 | Chr5: 8435291-8435537 | Arabidopsis thaliana |
AT5G24630:CDS:1 | 51 | Chr5: 8435632-8435682 | Arabidopsis thaliana |
AT5G24630:CDS:20.1 | 99 | Chr5: 8432523-8432621 | Arabidopsis thaliana |
AT5G24630:CDS:19.1 | 146 | Chr5: 8432713-8432858 | Arabidopsis thaliana |
AT5G24630:CDS:18.1 | 76 | Chr5: 8432991-8433066 | Arabidopsis thaliana |
AT5G24630:CDS:17.1 | 27 | Chr5: 8433249-8433275 | Arabidopsis thaliana |
AT5G24630:CDS:16.1 | 47 | Chr5: 8433361-8433407 | Arabidopsis thaliana |
AT5G24630:CDS:15.1 | 109 | Chr5: 8433677-8433785 | Arabidopsis thaliana |
AT5G24630:CDS:14.1 | 54 | Chr5: 8433956-8434009 | Arabidopsis thaliana |
AT5G24630:CDS:13 | 65 | Chr5: 8434086-8434150 | Arabidopsis thaliana |
AT5G24630:CDS:8.1 | 126 | Chr5: 8434236-8434361 | Arabidopsis thaliana |
AT5G24630:CDS:6.1 | 232 | Chr5: 8434440-8434671 | Arabidopsis thaliana |
AT5G24630:CDS:4.1 | 62 | Chr5: 8435056-8435117 | Arabidopsis thaliana |
AT5G24630:CDS:2.1 | 247 | Chr5: 8435291-8435537 | Arabidopsis thaliana |
AT5G24630:CDS:1.1 | 51 | Chr5: 8435632-8435682 | Arabidopsis thaliana |
AT5G24630:CDS:20.2 | 99 | Chr5: 8432523-8432621 | Arabidopsis thaliana |
AT5G24630:CDS:19.2 | 146 | Chr5: 8432713-8432858 | Arabidopsis thaliana |
AT5G24630:CDS:18.2 | 76 | Chr5: 8432991-8433066 | Arabidopsis thaliana |
AT5G24630:CDS:17.2 | 27 | Chr5: 8433249-8433275 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24620:exon:10 | 630 | Chr5: 8431785-8432414 | Arabidopsis thaliana |
AT5G03805:exon:1 | 403 | Chr5: 8431994-8432396 | Arabidopsis thaliana |
AT5G24630:exon:18 | 65 | Chr5: 8434086-8434150 | Arabidopsis thaliana |
AT5G24630:exon:10 | 235 | Chr5: 8434440-8434674 | Arabidopsis thaliana |
AT5G24630:exon:26 | 238 | Chr5: 8432384-8432621 | Arabidopsis thaliana |
AT5G24630:exon:8 | 74 | Chr5: 8435056-8435129 | Arabidopsis thaliana |
AT5G24630:exon:4 | 539 | Chr5: 8435632-8436170 | Arabidopsis thaliana |
AT5G24630:exon:15 | 117 | Chr5: 8434086-8434202 | Arabidopsis thaliana |
AT5G24630:exon:12 | 32 | Chr5: 8434330-8434361 | Arabidopsis thaliana |
AT5G24630:exon:1 | 244 | Chr5: 8435927-8436170 | Arabidopsis thaliana |
AT5G24630:exon:5 | 111 | Chr5: 8435632-8435742 | Arabidopsis thaliana |
AT5G24630:exon:13 | 126 | Chr5: 8434236-8434361 | Arabidopsis thaliana |
AT5G24630:exon:17 | 71 | Chr5: 8434086-8434156 | Arabidopsis thaliana |
AT5G24630:exon:14 | 114 | Chr5: 8434236-8434349 | Arabidopsis thaliana |
AT5G24630:exon:3 | 311 | Chr5: 8435860-8436170 | Arabidopsis thaliana |
AT5G24630:exon:25 | 99 | Chr5: 8432523-8432621 | Arabidopsis thaliana |
AT5G24630:exon:24 | 146 | Chr5: 8432713-8432858 | Arabidopsis thaliana |
AT5G24630:exon:23 | 76 | Chr5: 8432991-8433066 | Arabidopsis thaliana |
AT5G24630:exon:22 | 27 | Chr5: 8433249-8433275 | Arabidopsis thaliana |
AT5G24630:exon:21 | 47 | Chr5: 8433361-8433407 | Arabidopsis thaliana |
AT5G24630:exon:20 | 109 | Chr5: 8433677-8433785 | Arabidopsis thaliana |
AT5G24630:exon:19 | 54 | Chr5: 8433956-8434009 | Arabidopsis thaliana |
AT5G24630:exon:16 | 77 | Chr5: 8434086-8434162 | Arabidopsis thaliana |
AT5G24630:exon:11 | 232 | Chr5: 8434440-8434671 | Arabidopsis thaliana |
AT5G24630:exon:9 | 62 | Chr5: 8435056-8435117 | Arabidopsis thaliana |
AT5G24630:exon:7 | 247 | Chr5: 8435291-8435537 | Arabidopsis thaliana |
AT5G24630:exon:6 | 99 | Chr5: 8435632-8435730 | Arabidopsis thaliana |
AT5G24630:exon:2 | 334 | Chr5: 8435860-8436193 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24630:five_prime_UTR:4 | 488 | Chr5: 8435683-8436170 | Arabidopsis thaliana |
AT5G24630:five_prime_UTR:1 | 244 | Chr5: 8435927-8436170 | Arabidopsis thaliana |
AT5G24630:five_prime_UTR:5 | 60 | Chr5: 8435683-8435742 | Arabidopsis thaliana |
AT5G24630:five_prime_UTR:3 | 311 | Chr5: 8435860-8436170 | Arabidopsis thaliana |
AT5G24630:five_prime_UTR:6 | 48 | Chr5: 8435683-8435730 | Arabidopsis thaliana |
AT5G24630:five_prime_UTR:2 | 334 | Chr5: 8435860-8436193 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G24620 | locus:2153929 | AT5G24620 | 2411 | Chr5: 8430004-8432414 | A. thaliana | Pathogenesis-related thaumatin superfamily protein;(source:Araport11) | NULL | Pathogenesis-related thaumatin superfamily protein | ||
AT5G03805 | AT5G03805 | 509 | Chr5: 8431888-8432396 | A. thaliana | Natural antisense transcript overlaps with AT5G24620;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G24620.1 | 1538 | Chr5: 8430768-8432414 |
AT5G24630.3 | 1863 | Chr5: 8432384-8436170 |
AT5G24630.5 | 1839 | Chr5: 8432384-8436170 |
AT5G24630.1 | 1854 | Chr5: 8432384-8436170 |
AT5G24630.4 | 1851 | Chr5: 8432384-8436170 |
AT5G24630.6 | 1875 | Chr5: 8432384-8436170 |
AT5G24630.7 | 1841 | Chr5: 8432523-8436170 |
AT5G24630.8 | 1715 | Chr5: 8432523-8436170 |
AT5G24630.2 | 1591 | Chr5: 8432523-8436170 |
AT5G24630.12 | 1598 | Chr5: 8432523-8436170 |
AT5G24630.9 | 1706 | Chr5: 8432523-8436170 |
AT5G24630.10 | 1694 | Chr5: 8432523-8436170 |
AT5G24630.11 | 1609 | Chr5: 8432523-8436193 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24620:three_prime_UTR:2 | 125 | Chr5: 8432290-8432414 | Arabidopsis thaliana |
AT5G24630:three_prime_UTR:1 | 139 | Chr5: 8432384-8432522 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
BIN4_ARATH | developmental stage | Ubiquitously expressed at low levels during the mitotic cell cycle. |
BIN4_ARATH | function | Component of the DNA topoisomerase VI complex. Binds to DNA. Required for chromatin organization and progression of endoreduplication cycles. The loss of BIN4 activates the ATM- and ATR-dependent DNA damage responses in postmitotic cells and induces the ectopic expression of the mitotic G2/M-specific cyclin B1;1 gene in non-dividing cells. |
BIN4_ARATH | tissue specificity | Expressed in expanding cotyledons, vascular cells, elongating root cells, developing leaf trichomes, root and apical meristems and lateral root primordia. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex | ECO |
molecular function | |
double-stranded DNA binding | ECO |
biological process | |
positive regulation of cell growth | ECO |
root development | ECO |
trichome morphogenesis | ECO |
DNA endoreduplication | ECO |
epidermal cell differentiation | ECO |
chromosome organization | ECO |
shoot system development | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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