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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 9, Exons: 13, Five Prime UTRs: 6, Genes: 2, mRNAs: 9, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24620:CDS:4 | 41 | Chr5: 8431187-8431227 | Arabidopsis thaliana |
AT5G24620:CDS:5 | 366 | Chr5: 8431310-8431675 | Arabidopsis thaliana |
AT5G24620:CDS:6 | 505 | Chr5: 8431785-8432289 | Arabidopsis thaliana |
AT5G24620:CDS:1 | 986 | Chr5: 8430690-8431675 | Arabidopsis thaliana |
AT5G24620:CDS:6.1 | 505 | Chr5: 8431785-8432289 | Arabidopsis thaliana |
AT5G24620:CDS:2 | 923 | Chr5: 8430753-8431675 | Arabidopsis thaliana |
AT5G24620:CDS:6.2 | 505 | Chr5: 8431785-8432289 | Arabidopsis thaliana |
AT5G24620:CDS:3 | 758 | Chr5: 8430918-8431675 | Arabidopsis thaliana |
AT5G24620:CDS:6.3 | 505 | Chr5: 8431785-8432289 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24620:exon:1 | 66 | Chr5: 8430004-8430069 | Arabidopsis thaliana |
AT5G24620:exon:2 | 93 | Chr5: 8430339-8430431 | Arabidopsis thaliana |
AT5G24620:exon:6 | 180 | Chr5: 8431048-8431227 | Arabidopsis thaliana |
AT5G24620:exon:7 | 366 | Chr5: 8431310-8431675 | Arabidopsis thaliana |
AT5G24620:exon:9 | 576 | Chr5: 8431785-8432360 | Arabidopsis thaliana |
AT5G24620:exon:3 | 1267 | Chr5: 8430409-8431675 | Arabidopsis thaliana |
AT5G24620:exon:4 | 984 | Chr5: 8430692-8431675 | Arabidopsis thaliana |
AT5G24620:exon:8 | 505 | Chr5: 8431785-8432289 | Arabidopsis thaliana |
AT5G24620:exon:5 | 908 | Chr5: 8430768-8431675 | Arabidopsis thaliana |
AT5G24620:exon:10 | 630 | Chr5: 8431785-8432414 | Arabidopsis thaliana |
AT5G03805:exon:2 | 70 | Chr5: 8431888-8431957 | Arabidopsis thaliana |
AT5G03805:exon:1 | 403 | Chr5: 8431994-8432396 | Arabidopsis thaliana |
AT5G24630:exon:26 | 238 | Chr5: 8432384-8432621 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24620:five_prime_UTR:1 | 66 | Chr5: 8430004-8430069 | Arabidopsis thaliana |
AT5G24620:five_prime_UTR:2 | 93 | Chr5: 8430339-8430431 | Arabidopsis thaliana |
AT5G24620:five_prime_UTR:6 | 139 | Chr5: 8431048-8431186 | Arabidopsis thaliana |
AT5G24620:five_prime_UTR:3 | 281 | Chr5: 8430409-8430689 | Arabidopsis thaliana |
AT5G24620:five_prime_UTR:4 | 61 | Chr5: 8430692-8430752 | Arabidopsis thaliana |
AT5G24620:five_prime_UTR:5 | 150 | Chr5: 8430768-8430917 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G03805 | AT5G03805 | 509 | Chr5: 8431888-8432396 | A. thaliana | Natural antisense transcript overlaps with AT5G24620;(source:Araport11) | NULL | ||||
AT5G24630 | locus:2153939 | BIN4 | brassinosteroid-insensitive4 | 3810 | Chr5: 8432384-8436193 | A. thaliana | double-stranded DNA binding protein;(source:Araport11) | This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells. | double-stranded DNA binding | BIN4, MID |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G24620.2 | 1281 | Chr5: 8430004-8432360 |
AT5G24620.3 | 1772 | Chr5: 8430409-8432289 |
AT5G24620.4 | 1489 | Chr5: 8430692-8432289 |
AT5G24620.1 | 1538 | Chr5: 8430768-8432414 |
AT5G24630.3 | 1863 | Chr5: 8432384-8436170 |
AT5G24630.5 | 1839 | Chr5: 8432384-8436170 |
AT5G24630.1 | 1854 | Chr5: 8432384-8436170 |
AT5G24630.4 | 1851 | Chr5: 8432384-8436170 |
AT5G24630.6 | 1875 | Chr5: 8432384-8436170 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24620:three_prime_UTR:1 | 71 | Chr5: 8432290-8432360 | Arabidopsis thaliana |
AT5G24620:three_prime_UTR:2 | 125 | Chr5: 8432290-8432414 | Arabidopsis thaliana |
AT5G24630:three_prime_UTR:1 | 139 | Chr5: 8432384-8432522 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
defense response | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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