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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 9, Exons: 9, Five Prime UTRs: 5, Gene: 1, mRNAs: 5, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24230:CDS:1 | 104 | Chr5: 8229182-8229285 | Arabidopsis thaliana |
AT5G24230:CDS:2 | 643 | Chr5: 8229545-8230187 | Arabidopsis thaliana |
AT5G24230:CDS:3 | 363 | Chr5: 8230479-8230841 | Arabidopsis thaliana |
AT5G24230:CDS:1.1 | 104 | Chr5: 8229182-8229285 | Arabidopsis thaliana |
AT5G24230:CDS:2.1 | 643 | Chr5: 8229545-8230187 | Arabidopsis thaliana |
AT5G24230:CDS:3.1 | 363 | Chr5: 8230479-8230841 | Arabidopsis thaliana |
AT5G24230:CDS:1.2 | 104 | Chr5: 8229182-8229285 | Arabidopsis thaliana |
AT5G24230:CDS:2.2 | 643 | Chr5: 8229545-8230187 | Arabidopsis thaliana |
AT5G24230:CDS:3.2 | 363 | Chr5: 8230479-8230841 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24230:exon:1 | 146 | Chr5: 8228829-8228974 | Arabidopsis thaliana |
AT5G24230:exon:4 | 133 | Chr5: 8229153-8229285 | Arabidopsis thaliana |
AT5G24230:exon:2 | 124 | Chr5: 8228851-8228974 | Arabidopsis thaliana |
AT5G24230:exon:5 | 115 | Chr5: 8229171-8229285 | Arabidopsis thaliana |
AT5G24230:exon:3 | 307 | Chr5: 8228979-8229285 | Arabidopsis thaliana |
AT5G24230:exon:6 | 643 | Chr5: 8229545-8230187 | Arabidopsis thaliana |
AT5G24230:exon:7 | 486 | Chr5: 8230479-8230964 | Arabidopsis thaliana |
AT5G24240:exon:5 | 575 | Chr5: 8230916-8231490 | Arabidopsis thaliana |
AT5G24240:exon:4 | 549 | Chr5: 8230942-8231490 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24230:five_prime_UTR:1 | 146 | Chr5: 8228829-8228974 | Arabidopsis thaliana |
AT5G24230:five_prime_UTR:4 | 29 | Chr5: 8229153-8229181 | Arabidopsis thaliana |
AT5G24230:five_prime_UTR:2 | 124 | Chr5: 8228851-8228974 | Arabidopsis thaliana |
AT5G24230:five_prime_UTR:5 | 11 | Chr5: 8229171-8229181 | Arabidopsis thaliana |
AT5G24230:five_prime_UTR:3 | 203 | Chr5: 8228979-8229181 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G24240 | locus:2169774 | AT5G24240 | 3235 | Chr5: 8230916-8234150 | A. thaliana | phosphatidylinositol 4-kinase gamma-like protein;(source:Araport11) | Encodes PI4Kc3, localizes to the nucleus and has autophosphorylation activity, but no lipid kinase activity. Overexpression mutants display late-flowering phenotype. | Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein | AtPI4Kgamma3, MOP9.5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G24230.1 | 1408 | Chr5: 8228829-8230964 |
AT5G24230.2 | 1368 | Chr5: 8228851-8230964 |
AT5G24230.3 | 1436 | Chr5: 8228979-8230964 |
AT5G24240.1 | 2244 | Chr5: 8230916-8233385 |
AT5G24240.2 | 2380 | Chr5: 8230942-8234150 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24230:three_prime_UTR:1 | 123 | Chr5: 8230842-8230964 | Arabidopsis thaliana |
AT5G24240:three_prime_UTR:2 | 194 | Chr5: 8230916-8231109 | Arabidopsis thaliana |
AT5G24240:three_prime_UTR:1 | 168 | Chr5: 8230942-8231109 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE29740 | 1142 | Chr5: 8227703-8228844 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE29740:transposon_fragment:1 | 1142 | Chr5: 8227703-8228844 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
lipid metabolic process | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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