External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
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- Plaza
- pep2pro
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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- AthaMap
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23870:CDS:13 | 144 | Chr5: 8046309-8046452 | Arabidopsis thaliana |
AT5G23870:CDS:11 | 149 | Chr5: 8046541-8046689 | Arabidopsis thaliana |
AT5G23870:CDS:10 | 106 | Chr5: 8046780-8046885 | Arabidopsis thaliana |
AT5G23870:CDS:9 | 78 | Chr5: 8046973-8047050 | Arabidopsis thaliana |
AT5G23870:CDS:8 | 60 | Chr5: 8047138-8047197 | Arabidopsis thaliana |
AT5G23870:CDS:7 | 61 | Chr5: 8047267-8047327 | Arabidopsis thaliana |
AT5G23870:CDS:6 | 125 | Chr5: 8047406-8047530 | Arabidopsis thaliana |
AT5G23870:CDS:5 | 87 | Chr5: 8047709-8047795 | Arabidopsis thaliana |
AT5G23870:CDS:4 | 80 | Chr5: 8047938-8048017 | Arabidopsis thaliana |
AT5G23870:CDS:3 | 130 | Chr5: 8048637-8048766 | Arabidopsis thaliana |
AT5G23870:CDS:2 | 83 | Chr5: 8049456-8049538 | Arabidopsis thaliana |
AT5G23870:CDS:1 | 145 | Chr5: 8049855-8049999 | Arabidopsis thaliana |
AT5G23870:CDS:13.1 | 144 | Chr5: 8046309-8046452 | Arabidopsis thaliana |
AT5G23870:CDS:11.1 | 149 | Chr5: 8046541-8046689 | Arabidopsis thaliana |
AT5G23870:CDS:10.1 | 106 | Chr5: 8046780-8046885 | Arabidopsis thaliana |
AT5G23870:CDS:9.1 | 78 | Chr5: 8046973-8047050 | Arabidopsis thaliana |
AT5G23870:CDS:8.1 | 60 | Chr5: 8047138-8047197 | Arabidopsis thaliana |
AT5G23870:CDS:7.1 | 61 | Chr5: 8047267-8047327 | Arabidopsis thaliana |
AT5G23870:CDS:6.1 | 125 | Chr5: 8047406-8047530 | Arabidopsis thaliana |
AT5G23870:CDS:5.1 | 87 | Chr5: 8047709-8047795 | Arabidopsis thaliana |
AT5G23870:CDS:4.1 | 80 | Chr5: 8047938-8048017 | Arabidopsis thaliana |
AT5G23870:CDS:3.1 | 130 | Chr5: 8048637-8048766 | Arabidopsis thaliana |
AT5G23870:CDS:2.1 | 83 | Chr5: 8049456-8049538 | Arabidopsis thaliana |
AT5G23870:CDS:1.1 | 145 | Chr5: 8049855-8049999 | Arabidopsis thaliana |
AT5G23870:CDS:16 | 44 | Chr5: 8045958-8046001 | Arabidopsis thaliana |
AT5G23870:CDS:14 | 37 | Chr5: 8046149-8046185 | Arabidopsis thaliana |
AT5G23870:CDS:12 | 126 | Chr5: 8046327-8046452 | Arabidopsis thaliana |
AT5G23870:CDS:11.2 | 149 | Chr5: 8046541-8046689 | Arabidopsis thaliana |
AT5G23870:CDS:10.2 | 106 | Chr5: 8046780-8046885 | Arabidopsis thaliana |
AT5G23870:CDS:9.2 | 78 | Chr5: 8046973-8047050 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23870:exon:17 | 913 | Chr5: 8045540-8046452 | Arabidopsis thaliana |
AT5G23870:exon:14 | 304 | Chr5: 8046149-8046452 | Arabidopsis thaliana |
AT5G23870:exon:18 | 462 | Chr5: 8045540-8046001 | Arabidopsis thaliana |
AT5G23870:exon:15 | 37 | Chr5: 8046149-8046185 | Arabidopsis thaliana |
AT5G23870:exon:1 | 541 | Chr5: 8049855-8050395 | Arabidopsis thaliana |
AT5G23870:exon:16 | 540 | Chr5: 8045646-8046185 | Arabidopsis thaliana |
AT5G23870:exon:13 | 126 | Chr5: 8046327-8046452 | Arabidopsis thaliana |
AT5G23870:exon:12 | 149 | Chr5: 8046541-8046689 | Arabidopsis thaliana |
AT5G23870:exon:11 | 106 | Chr5: 8046780-8046885 | Arabidopsis thaliana |
AT5G23870:exon:10 | 78 | Chr5: 8046973-8047050 | Arabidopsis thaliana |
AT5G23870:exon:9 | 60 | Chr5: 8047138-8047197 | Arabidopsis thaliana |
AT5G23870:exon:8 | 61 | Chr5: 8047267-8047327 | Arabidopsis thaliana |
AT5G23870:exon:7 | 125 | Chr5: 8047406-8047530 | Arabidopsis thaliana |
AT5G23870:exon:6 | 87 | Chr5: 8047709-8047795 | Arabidopsis thaliana |
AT5G23870:exon:5 | 80 | Chr5: 8047938-8048017 | Arabidopsis thaliana |
AT5G23870:exon:4 | 130 | Chr5: 8048637-8048766 | Arabidopsis thaliana |
AT5G23870:exon:3 | 83 | Chr5: 8049456-8049538 | Arabidopsis thaliana |
AT5G23870:exon:2 | 411 | Chr5: 8049855-8050265 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23870:five_prime_UTR:1 | 396 | Chr5: 8050000-8050395 | Arabidopsis thaliana |
AT5G23870:five_prime_UTR:2 | 266 | Chr5: 8050000-8050265 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G23870.4 | 2413 | Chr5: 8045540-8050395 |
AT5G23870.1 | 2266 | Chr5: 8045540-8050395 |
AT5G23870.2 | 2125 | Chr5: 8045540-8050395 |
AT5G23870.3 | 2036 | Chr5: 8045646-8050265 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23870:three_prime_UTR:3 | 769 | Chr5: 8045540-8046308 | Arabidopsis thaliana |
AT5G23870:three_prime_UTR:4 | 462 | Chr5: 8045540-8046001 | Arabidopsis thaliana |
AT5G23870:three_prime_UTR:1 | 160 | Chr5: 8046149-8046308 | Arabidopsis thaliana |
AT5G23870:three_prime_UTR:5 | 418 | Chr5: 8045540-8045957 | Arabidopsis thaliana |
AT5G23870:three_prime_UTR:2 | 414 | Chr5: 8045646-8046059 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PAE9_ARATH F4KEB8_ARATH PAE9_ARATH-2 | function | Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. |
PAE9_ARATH F4KEB8_ARATH PAE9_ARATH-2 | similarity | Belongs to the pectinacetylesterase family. |
Function
Gene Ontology
cellular component | |
---|---|
extracellular region | ECO |
molecular function | |
pectin acetylesterase activity | ECO |
biological process | |
cell wall organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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