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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23510:CDS:1 | 38 | Chr5: 7927055-7927092 | Arabidopsis thaliana |
AT5G23510:CDS:2 | 191 | Chr5: 7927187-7927377 | Arabidopsis thaliana |
AT5G23510:CDS:4 | 122 | Chr5: 7927457-7927578 | Arabidopsis thaliana |
AT5G23510:CDS:5 | 43 | Chr5: 7927663-7927705 | Arabidopsis thaliana |
AT5G23510:CDS:6 | 92 | Chr5: 7927790-7927881 | Arabidopsis thaliana |
AT5G23510:CDS:7 | 49 | Chr5: 7928070-7928118 | Arabidopsis thaliana |
AT5G23510:CDS:8 | 71 | Chr5: 7928345-7928415 | Arabidopsis thaliana |
AT5G23510:CDS:9 | 114 | Chr5: 7928499-7928612 | Arabidopsis thaliana |
AT5G23510:CDS:10 | 98 | Chr5: 7928734-7928831 | Arabidopsis thaliana |
AT5G23510:CDS:11 | 46 | Chr5: 7928902-7928947 | Arabidopsis thaliana |
AT5G23510:CDS:13 | 57 | Chr5: 7929061-7929117 | Arabidopsis thaliana |
AT5G23510:CDS:3 | 112 | Chr5: 7927266-7927377 | Arabidopsis thaliana |
AT5G23510:CDS:4.1 | 122 | Chr5: 7927457-7927578 | Arabidopsis thaliana |
AT5G23510:CDS:5.1 | 43 | Chr5: 7927663-7927705 | Arabidopsis thaliana |
AT5G23510:CDS:6.1 | 92 | Chr5: 7927790-7927881 | Arabidopsis thaliana |
AT5G23510:CDS:7.1 | 49 | Chr5: 7928070-7928118 | Arabidopsis thaliana |
AT5G23510:CDS:8.1 | 71 | Chr5: 7928345-7928415 | Arabidopsis thaliana |
AT5G23510:CDS:9.1 | 114 | Chr5: 7928499-7928612 | Arabidopsis thaliana |
AT5G23510:CDS:10.1 | 98 | Chr5: 7928734-7928831 | Arabidopsis thaliana |
AT5G23510:CDS:11.1 | 46 | Chr5: 7928902-7928947 | Arabidopsis thaliana |
AT5G23510:CDS:13.1 | 57 | Chr5: 7929061-7929117 | Arabidopsis thaliana |
AT5G23510:CDS:3.1 | 112 | Chr5: 7927266-7927377 | Arabidopsis thaliana |
AT5G23510:CDS:4.2 | 122 | Chr5: 7927457-7927578 | Arabidopsis thaliana |
AT5G23510:CDS:5.2 | 43 | Chr5: 7927663-7927705 | Arabidopsis thaliana |
AT5G23510:CDS:6.2 | 92 | Chr5: 7927790-7927881 | Arabidopsis thaliana |
AT5G23510:CDS:7.2 | 49 | Chr5: 7928070-7928118 | Arabidopsis thaliana |
AT5G23510:CDS:8.2 | 71 | Chr5: 7928345-7928415 | Arabidopsis thaliana |
AT5G23510:CDS:9.2 | 114 | Chr5: 7928499-7928612 | Arabidopsis thaliana |
AT5G23510:CDS:10.2 | 98 | Chr5: 7928734-7928831 | Arabidopsis thaliana |
AT5G23510:CDS:12 | 115 | Chr5: 7928902-7929016 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23510:exon:1 | 148 | Chr5: 7926945-7927092 | Arabidopsis thaliana |
AT5G23510:exon:4 | 191 | Chr5: 7927187-7927377 | Arabidopsis thaliana |
AT5G23510:exon:14 | 314 | Chr5: 7929061-7929374 | Arabidopsis thaliana |
AT5G23510:exon:2 | 256 | Chr5: 7927122-7927377 | Arabidopsis thaliana |
AT5G23510:exon:12 | 46 | Chr5: 7928902-7928947 | Arabidopsis thaliana |
AT5G23510:exon:15 | 327 | Chr5: 7929061-7929387 | Arabidopsis thaliana |
AT5G23510:exon:3 | 250 | Chr5: 7927128-7927377 | Arabidopsis thaliana |
AT5G23510:exon:5 | 122 | Chr5: 7927457-7927578 | Arabidopsis thaliana |
AT5G23510:exon:6 | 43 | Chr5: 7927663-7927705 | Arabidopsis thaliana |
AT5G23510:exon:7 | 92 | Chr5: 7927790-7927881 | Arabidopsis thaliana |
AT5G23510:exon:8 | 49 | Chr5: 7928070-7928118 | Arabidopsis thaliana |
AT5G23510:exon:9 | 71 | Chr5: 7928345-7928415 | Arabidopsis thaliana |
AT5G23510:exon:10 | 114 | Chr5: 7928499-7928612 | Arabidopsis thaliana |
AT5G23510:exon:11 | 98 | Chr5: 7928734-7928831 | Arabidopsis thaliana |
AT5G23510:exon:13 | 437 | Chr5: 7928902-7929338 | Arabidopsis thaliana |
AT5G23520:exon:7 | 662 | Chr5: 7928993-7929654 | Arabidopsis thaliana |
AT5G23520:exon:6 | 304 | Chr5: 7929351-7929654 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23510:five_prime_UTR:1 | 110 | Chr5: 7926945-7927054 | Arabidopsis thaliana |
AT5G23510:five_prime_UTR:2 | 144 | Chr5: 7927122-7927265 | Arabidopsis thaliana |
AT5G23510:five_prime_UTR:3 | 138 | Chr5: 7927128-7927265 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G23520 | locus:2171676 | AT5G23520 | 2801 | Chr5: 7928993-7931793 | A. thaliana | smr (Small MutS Related) domain-containing protein;(source:Araport11) | NULL | smr (Small MutS Related) domain-containing protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G23510.2 | 1288 | Chr5: 7926945-7929374 |
AT5G23510.3 | 1218 | Chr5: 7927122-7929387 |
AT5G23510.1 | 1276 | Chr5: 7927128-7929338 |
AT5G23520.1 | 2157 | Chr5: 7928993-7931793 |
AT5G23520.2 | 1948 | Chr5: 7929351-7931793 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G23510:three_prime_UTR:2 | 257 | Chr5: 7929118-7929374 | Arabidopsis thaliana |
AT5G23510:three_prime_UTR:3 | 270 | Chr5: 7929118-7929387 | Arabidopsis thaliana |
AT5G23510:three_prime_UTR:1 | 322 | Chr5: 7929017-7929338 | Arabidopsis thaliana |
AT5G23520:three_prime_UTR:2 | 598 | Chr5: 7928993-7929590 | Arabidopsis thaliana |
AT5G23520:three_prime_UTR:1 | 240 | Chr5: 7929351-7929590 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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