help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: 403

Gene : AT5G23430 A. thaliana

DB identifier  ? AT5G23430 Secondary Identifier  ? locus:2154438
Brief Description  Transducin/WD40 repeat-like superfamily protein
TAIR Computational Description  Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
TAIR Curator Summary  One of four katanin p80 subunits. Involved in targeting of katanin complex to crossover and branch points to properly sever microtubules.
TAIR Short Description  Transducin/WD40 repeat-like superfamily protein
TAIR Aliases  KTN80.4

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6970  
Location: Chr5:7893594-7900563 reverse strand

Gene models - AT5G23430 AT5G23430

? Gene models

Transcripts: 3  Exons: 56  Introns: 53 

Overlapping Features

? Genome features that overlap coordinates of this Gene

25 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
KTN84_ARATH-2 KTN84_ARATH function May participate in a complex which severs microtubules in an ATP-dependent manner (By similarity). This activity may promote rapid reorganization of cellular microtubule arrays (By similarity). Confers precision to microtubule (MT) severing by specific targeting of KTN1 to MT cleavage sites such as crossover or branching nucleation sites (PubMed:28978669). Together with other KTN80s, regulates cell elongation by modulating MT organization (PubMed:28978669).
KTN84_ARATH-2 KTN84_ARATH similarity Belongs to the WD repeat KATNB1 family.
KTN84_ARATH-2 KTN84_ARATH subcellular location Present in dynamic discrete particles specifically localized to microtubule (MT) crossovers and branching nucleation sites.
KTN84_ARATH-2 KTN84_ARATH tissue specificity Expressed in siliques, flowers, leaves, stems and roots.

2 Proteins

Function

Gene Ontology

cellular component
microtubule cytoskeleton  ? ECO  
Cul4-RING E3 ubiquitin ligase complex  ? ECO  
microtubule  ? ECO  
cytoplasm  ? ECO  
katanin complex  ? ECO  
molecular function
microtubule binding  ? ECO  
biological process
microtubule severing  ? ECO  
regulation of unidimensional cell growth  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets