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Gene : HMGB6 A. thaliana

DB identifier  ? AT5G23420 Secondary Identifier  ? locus:2154433
Name  ? high-mobility group box 6 Brief Description  high-mobility group box 6
TAIR Computational Description  high-mobility group box 6;(source:Araport11)
TAIR Curator Summary  Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
TAIR Short Description  high-mobility group box 6
TAIR Aliases  HMGB6

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1895  
Location: Chr5:7888461-7890355 reverse strand

Gene models - HMGB6 AT5G23420

? Gene models

Transcripts: 2  Exons: 12  Introns: 10 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
HMGB7_ARATH function Binds preferentially double-stranded supercoiled DNA (PubMed:14756567). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus (PubMed:16698901).
HMGB7_ARATH similarity Belongs to the HMGB family.
HMGB7_ARATH tissue specificity Expressed at low levels in lateral roots, root tips, cotyledons, leaves and flowers (including pedicels, but excluding styles).

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
DNA-binding transcription factor activity  ? ECO  
DNA binding  ? ECO  
biological process
karyogamy  ? ECO  
polar nucleus fusion  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets