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Gene : TK1b A. thaliana

DB identifier  ? AT5G23070 Secondary Identifier  ? locus:2178297
Name  ? thymidine kinase 1b Brief Description  Thymidine kinase
TAIR Computational Description  Thymidine kinase;(source:Araport11)
TAIR Curator Summary  Encodes a thymidine kinase that salvages DNA precursors. The pyrimidine salvage pathway is crucial for chloroplast development and genome replication, as well as for the maintenance of its integrity.
TAIR Short Description  Thymidine kinase
TAIR Aliases  AtTK1b, TK1b, TK2

3 Gene Rifs

1 Organism

13 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1187  
Location: Chr5:7741792-7742978

Gene models - TK1b AT5G23070

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
KITHB_ARATH function Part of the salvage pathway for purine and pyrimidine deoxyribonucleotide synthesis. Phosphorylates preferentially purines over pyrimidines.
KITHB_ARATH pathway Purine metabolism.
KITHB_ARATH pathway Pyrimidine metabolism.
KITHB_ARATH similarity Belongs to the thymidine kinase family.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast  ? ECO  
molecular function
thymidine kinase activity  ? ECO  
metal ion binding  ? ECO  
identical protein binding  ? ECO  
ATP binding  ? ECO  
biological process
seedling development  ? ECO  
response to cold  ? ECO  
DNA biosynthetic process  ? ECO  
phosphorylation  ? ECO  
thymidine metabolic process  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets