External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G22460:CDS:4 | 291 | Chr5: 7443659-7443949 | Arabidopsis thaliana |
AT5G22460:CDS:3 | 268 | Chr5: 7444043-7444310 | Arabidopsis thaliana |
AT5G22460:CDS:2 | 212 | Chr5: 7444395-7444606 | Arabidopsis thaliana |
AT5G22460:CDS:1 | 252 | Chr5: 7445018-7445269 | Arabidopsis thaliana |
AT5G22460:CDS:4.1 | 291 | Chr5: 7443659-7443949 | Arabidopsis thaliana |
AT5G22460:CDS:3.1 | 268 | Chr5: 7444043-7444310 | Arabidopsis thaliana |
AT5G22460:CDS:2.1 | 212 | Chr5: 7444395-7444606 | Arabidopsis thaliana |
AT5G22460:CDS:1.1 | 252 | Chr5: 7445018-7445269 | Arabidopsis thaliana |
AT5G22460:CDS:4.2 | 291 | Chr5: 7443659-7443949 | Arabidopsis thaliana |
AT5G22460:CDS:3.2 | 268 | Chr5: 7444043-7444310 | Arabidopsis thaliana |
AT5G22460:CDS:2.2 | 212 | Chr5: 7444395-7444606 | Arabidopsis thaliana |
AT5G22460:CDS:1.2 | 252 | Chr5: 7445018-7445269 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G22450:exon:3 | 367 | Chr5: 7443097-7443463 | Arabidopsis thaliana |
AT5G22450:exon:1 | 170 | Chr5: 7443294-7443463 | Arabidopsis thaliana |
AT5G22460:exon:10 | 490 | Chr5: 7443460-7443949 | Arabidopsis thaliana |
AT5G22460:exon:5 | 269 | Chr5: 7445018-7445286 | Arabidopsis thaliana |
AT5G22460:exon:1 | 260 | Chr5: 7445380-7445639 | Arabidopsis thaliana |
AT5G22460:exon:9 | 449 | Chr5: 7443501-7443949 | Arabidopsis thaliana |
AT5G22460:exon:3 | 556 | Chr5: 7445018-7445573 | Arabidopsis thaliana |
AT5G22460:exon:8 | 442 | Chr5: 7443508-7443949 | Arabidopsis thaliana |
AT5G22460:exon:7 | 268 | Chr5: 7444043-7444310 | Arabidopsis thaliana |
AT5G22460:exon:6 | 212 | Chr5: 7444395-7444606 | Arabidopsis thaliana |
AT5G22460:exon:4 | 278 | Chr5: 7445018-7445295 | Arabidopsis thaliana |
AT5G22460:exon:2 | 21 | Chr5: 7445380-7445400 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G22450:five_prime_UTR:3 | 367 | Chr5: 7443097-7443463 | Arabidopsis thaliana |
AT5G22450:five_prime_UTR:1 | 170 | Chr5: 7443294-7443463 | Arabidopsis thaliana |
AT5G22460:five_prime_UTR:5 | 17 | Chr5: 7445270-7445286 | Arabidopsis thaliana |
AT5G22460:five_prime_UTR:1 | 260 | Chr5: 7445380-7445639 | Arabidopsis thaliana |
AT5G22460:five_prime_UTR:3 | 304 | Chr5: 7445270-7445573 | Arabidopsis thaliana |
AT5G22460:five_prime_UTR:4 | 26 | Chr5: 7445270-7445295 | Arabidopsis thaliana |
AT5G22460:five_prime_UTR:2 | 21 | Chr5: 7445380-7445400 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G22450 | locus:2176347 | AT5G22450 | 6559 | Chr5: 7436905-7443463 | A. thaliana | spectrin beta chain, brain;(source:Araport11) | SAGA complex subunit. Regulates gene expression by affecting histone H3 acetylation. | NULL | SCS1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G22450.1 | 4089 | Chr5: 7436932-7443463 |
AT5G22450.3 | 3892 | Chr5: 7436932-7443463 |
AT5G22460.1 | 1499 | Chr5: 7443460-7445639 |
AT5G22460.3 | 1485 | Chr5: 7443501-7445573 |
AT5G22460.2 | 1221 | Chr5: 7443508-7445400 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G22460:three_prime_UTR:3 | 199 | Chr5: 7443460-7443658 | Arabidopsis thaliana |
AT5G22460:three_prime_UTR:2 | 158 | Chr5: 7443501-7443658 | Arabidopsis thaliana |
AT5G22460:three_prime_UTR:1 | 151 | Chr5: 7443508-7443658 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
plant-type cell wall | ECO |
vacuole | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...