External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20680:CDS:1 | 53 | Chr5: 6998946-6998998 | Arabidopsis thaliana |
AT5G20680:CDS:2 | 152 | Chr5: 6999220-6999371 | Arabidopsis thaliana |
AT5G20680:CDS:4 | 84 | Chr5: 6999682-6999765 | Arabidopsis thaliana |
AT5G20680:CDS:6 | 342 | Chr5: 6999911-7000252 | Arabidopsis thaliana |
AT5G20680:CDS:7 | 196 | Chr5: 7000450-7000645 | Arabidopsis thaliana |
AT5G20680:CDS:8 | 829 | Chr5: 7000768-7001596 | Arabidopsis thaliana |
AT5G20680:CDS:3 | 151 | Chr5: 6999221-6999371 | Arabidopsis thaliana |
AT5G20680:CDS:4.1 | 84 | Chr5: 6999682-6999765 | Arabidopsis thaliana |
AT5G20680:CDS:6.1 | 342 | Chr5: 6999911-7000252 | Arabidopsis thaliana |
AT5G20680:CDS:7.1 | 196 | Chr5: 7000450-7000645 | Arabidopsis thaliana |
AT5G20680:CDS:8.1 | 829 | Chr5: 7000768-7001596 | Arabidopsis thaliana |
AT5G20680:CDS:1.1 | 53 | Chr5: 6998946-6998998 | Arabidopsis thaliana |
AT5G20680:CDS:2.1 | 152 | Chr5: 6999220-6999371 | Arabidopsis thaliana |
AT5G20680:CDS:4.2 | 84 | Chr5: 6999682-6999765 | Arabidopsis thaliana |
AT5G20680:CDS:6.2 | 342 | Chr5: 6999911-7000252 | Arabidopsis thaliana |
AT5G20680:CDS:7.2 | 196 | Chr5: 7000450-7000645 | Arabidopsis thaliana |
AT5G20680:CDS:8.2 | 829 | Chr5: 7000768-7001596 | Arabidopsis thaliana |
AT5G20680:CDS:1.2 | 53 | Chr5: 6998946-6998998 | Arabidopsis thaliana |
AT5G20680:CDS:2.2 | 152 | Chr5: 6999220-6999371 | Arabidopsis thaliana |
AT5G20680:CDS:4.3 | 84 | Chr5: 6999682-6999765 | Arabidopsis thaliana |
AT5G20680:CDS:6.3 | 342 | Chr5: 6999911-7000252 | Arabidopsis thaliana |
AT5G20680:CDS:7.3 | 196 | Chr5: 7000450-7000645 | Arabidopsis thaliana |
AT5G20680:CDS:8.3 | 829 | Chr5: 7000768-7001596 | Arabidopsis thaliana |
AT5G20680:CDS:1.3 | 53 | Chr5: 6998946-6998998 | Arabidopsis thaliana |
AT5G20680:CDS:2.3 | 152 | Chr5: 6999220-6999371 | Arabidopsis thaliana |
AT5G20680:CDS:4.4 | 84 | Chr5: 6999682-6999765 | Arabidopsis thaliana |
AT5G20680:CDS:6.4 | 342 | Chr5: 6999911-7000252 | Arabidopsis thaliana |
AT5G20680:CDS:7.4 | 196 | Chr5: 7000450-7000645 | Arabidopsis thaliana |
AT5G20680:CDS:8.4 | 829 | Chr5: 7000768-7001596 | Arabidopsis thaliana |
AT5G20680:CDS:5 | 349 | Chr5: 6999904-7000252 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20680:exon:6 | 147 | Chr5: 6998852-6998998 | Arabidopsis thaliana |
AT5G20680:exon:1 | 361 | Chr5: 6997990-6998350 | Arabidopsis thaliana |
AT5G20680:exon:16 | 1266 | Chr5: 7000768-7002033 | Arabidopsis thaliana |
AT5G20680:exon:2 | 965 | Chr5: 6998034-6998998 | Arabidopsis thaliana |
AT5G20680:exon:14 | 1178 | Chr5: 7000768-7001945 | Arabidopsis thaliana |
AT5G20680:exon:3 | 771 | Chr5: 6998043-6998813 | Arabidopsis thaliana |
AT5G20680:exon:7 | 99 | Chr5: 6998900-6998998 | Arabidopsis thaliana |
AT5G20680:exon:15 | 1180 | Chr5: 7000768-7001947 | Arabidopsis thaliana |
AT5G20680:exon:4 | 248 | Chr5: 6998103-6998350 | Arabidopsis thaliana |
AT5G20680:exon:5 | 220 | Chr5: 6998779-6998998 | Arabidopsis thaliana |
AT5G20680:exon:8 | 152 | Chr5: 6999220-6999371 | Arabidopsis thaliana |
AT5G20680:exon:9 | 84 | Chr5: 6999682-6999765 | Arabidopsis thaliana |
AT5G20680:exon:11 | 342 | Chr5: 6999911-7000252 | Arabidopsis thaliana |
AT5G20680:exon:10 | 398 | Chr5: 6999855-7000252 | Arabidopsis thaliana |
AT5G20680:exon:12 | 196 | Chr5: 7000450-7000645 | Arabidopsis thaliana |
AT5G20680:exon:13 | 1143 | Chr5: 7000768-7001910 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20680:five_prime_UTR:6 | 94 | Chr5: 6998852-6998945 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:1 | 361 | Chr5: 6997990-6998350 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:8 | 1 | Chr5: 6999220-6999220 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:2 | 912 | Chr5: 6998034-6998945 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:3 | 771 | Chr5: 6998043-6998813 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:7 | 46 | Chr5: 6998900-6998945 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:4 | 248 | Chr5: 6998103-6998350 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:5 | 167 | Chr5: 6998779-6998945 | Arabidopsis thaliana |
AT5G20680:five_prime_UTR:9 | 49 | Chr5: 6999855-6999903 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G20680.3 | 2548 | Chr5: 6997990-7002033 |
AT5G20680.2 | 2401 | Chr5: 6997990-7002033 |
AT5G20680.4 | 2917 | Chr5: 6998034-7001945 |
AT5G20680.5 | 2824 | Chr5: 6998043-7001947 |
AT5G20680.1 | 2385 | Chr5: 6998103-7001910 |
AT5G20680.6 | 1737 | Chr5: 6999855-7001910 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20680:three_prime_UTR:4 | 437 | Chr5: 7001597-7002033 | Arabidopsis thaliana |
AT5G20680:three_prime_UTR:2 | 349 | Chr5: 7001597-7001945 | Arabidopsis thaliana |
AT5G20680:three_prime_UTR:3 | 351 | Chr5: 7001597-7001947 | Arabidopsis thaliana |
AT5G20680:three_prime_UTR:1 | 314 | Chr5: 7001597-7001910 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
TBL16_ARATH TBL16_ARATH-2 | function | May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins (By similarity). May be involved in the specific O-acetylation of cell wall polymers (By similarity). |
A0A654G2V4_ARATH A0A1P8BFS1_ARATH TBL16_ARATH TBL16_ARATH-2 | similarity | Belongs to the PC-esterase family. TBL subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
trans-Golgi network | ECO |
Golgi trans cisterna | ECO |
Golgi apparatus | ECO |
endosome | ECO |
membrane | ECO |
molecular function | |
transferase activity | ECO |
biological process | |
xylan biosynthetic process | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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