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Gene : TBL16 A. thaliana

DB identifier  ? AT5G20680 Secondary Identifier  ? locus:2180399
Name  ? TRICHOME BIREFRINGENCE-LIKE 16 Brief Description  TRICHOME BIREFRINGENCE-LIKE 16
TAIR Computational Description  TRICHOME BIREFRINGENCE-LIKE 16;(source:Araport11)
TAIR Curator Summary  Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
TAIR Short Description  TRICHOME BIREFRINGENCE-LIKE 16
TAIR Aliases  TBL16

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4044  
Location: Chr5:6997990-7002033

Gene models - TBL16 AT5G20680

? Gene models

Transcripts: 6  Exons: 36  Introns: 30 

Overlapping Features

? Genome features that overlap coordinates of this Gene

22 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
TBL16_ARATH TBL16_ARATH-2 function May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins (By similarity). May be involved in the specific O-acetylation of cell wall polymers (By similarity).
A0A654G2V4_ARATH A0A1P8BFS1_ARATH TBL16_ARATH TBL16_ARATH-2 similarity Belongs to the PC-esterase family. TBL subfamily.

4 Proteins

Function

Gene Ontology

cellular component
trans-Golgi network  ? ECO  
Golgi trans cisterna  ? ECO  
Golgi apparatus  ? ECO  
endosome  ? ECO  
membrane  ? ECO  
molecular function
transferase activity  ? ECO  
biological process
xylan biosynthetic process  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets