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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 2, CDSs: 31, Exons: 18, Five Prime UTRs: 6, Gene: 1, mRNAs: 4, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragment: 1
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G20225.1 | 1488 | Chr5: 6824535-6826112 |
AT5G20225.2 | 1091 | Chr5: 6825008-6826098 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20220:CDS:2 | 144 | Chr5: 6822208-6822351 | Arabidopsis thaliana |
AT5G20220:CDS:3 | 56 | Chr5: 6822466-6822521 | Arabidopsis thaliana |
AT5G20220:CDS:4 | 163 | Chr5: 6824184-6824346 | Arabidopsis thaliana |
AT5G20220:CDS:5 | 89 | Chr5: 6824431-6824519 | Arabidopsis thaliana |
AT5G20220:CDS:6 | 133 | Chr5: 6824598-6824730 | Arabidopsis thaliana |
AT5G20220:CDS:7 | 93 | Chr5: 6824816-6824908 | Arabidopsis thaliana |
AT5G20220:CDS:9 | 150 | Chr5: 6825008-6825157 | Arabidopsis thaliana |
AT5G20220:CDS:1 | 192 | Chr5: 6822160-6822351 | Arabidopsis thaliana |
AT5G20220:CDS:3.1 | 56 | Chr5: 6822466-6822521 | Arabidopsis thaliana |
AT5G20220:CDS:4.1 | 163 | Chr5: 6824184-6824346 | Arabidopsis thaliana |
AT5G20220:CDS:5.1 | 89 | Chr5: 6824431-6824519 | Arabidopsis thaliana |
AT5G20220:CDS:6.1 | 133 | Chr5: 6824598-6824730 | Arabidopsis thaliana |
AT5G20220:CDS:7.1 | 93 | Chr5: 6824816-6824908 | Arabidopsis thaliana |
AT5G20220:CDS:8 | 103 | Chr5: 6825008-6825110 | Arabidopsis thaliana |
AT5G20220:CDS:10 | 401 | Chr5: 6825371-6825771 | Arabidopsis thaliana |
AT5G20220:CDS:2.1 | 144 | Chr5: 6822208-6822351 | Arabidopsis thaliana |
AT5G20220:CDS:3.2 | 56 | Chr5: 6822466-6822521 | Arabidopsis thaliana |
AT5G20220:CDS:4.2 | 163 | Chr5: 6824184-6824346 | Arabidopsis thaliana |
AT5G20220:CDS:5.2 | 89 | Chr5: 6824431-6824519 | Arabidopsis thaliana |
AT5G20220:CDS:6.2 | 133 | Chr5: 6824598-6824730 | Arabidopsis thaliana |
AT5G20220:CDS:7.2 | 93 | Chr5: 6824816-6824908 | Arabidopsis thaliana |
AT5G20220:CDS:8.1 | 103 | Chr5: 6825008-6825110 | Arabidopsis thaliana |
AT5G20220:CDS:10.1 | 401 | Chr5: 6825371-6825771 | Arabidopsis thaliana |
AT5G20220:CDS:2.2 | 144 | Chr5: 6822208-6822351 | Arabidopsis thaliana |
AT5G20220:CDS:3.3 | 56 | Chr5: 6822466-6822521 | Arabidopsis thaliana |
AT5G20220:CDS:4.3 | 163 | Chr5: 6824184-6824346 | Arabidopsis thaliana |
AT5G20220:CDS:5.3 | 89 | Chr5: 6824431-6824519 | Arabidopsis thaliana |
AT5G20220:CDS:6.3 | 133 | Chr5: 6824598-6824730 | Arabidopsis thaliana |
AT5G20220:CDS:7.3 | 93 | Chr5: 6824816-6824908 | Arabidopsis thaliana |
AT5G20220:CDS:8.2 | 103 | Chr5: 6825008-6825110 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20220:exon:1 | 218 | Chr5: 6821881-6822098 | Arabidopsis thaliana |
AT5G20220:exon:13 | 150 | Chr5: 6825008-6825157 | Arabidopsis thaliana |
AT5G20220:exon:3 | 458 | Chr5: 6821894-6822351 | Arabidopsis thaliana |
AT5G20220:exon:14 | 401 | Chr5: 6825371-6825771 | Arabidopsis thaliana |
AT5G20220:exon:2 | 205 | Chr5: 6821894-6822098 | Arabidopsis thaliana |
AT5G20220:exon:6 | 165 | Chr5: 6822187-6822351 | Arabidopsis thaliana |
AT5G20220:exon:4 | 109 | Chr5: 6821990-6822098 | Arabidopsis thaliana |
AT5G20220:exon:5 | 172 | Chr5: 6822180-6822351 | Arabidopsis thaliana |
AT5G20220:exon:7 | 56 | Chr5: 6822466-6822521 | Arabidopsis thaliana |
AT5G20220:exon:8 | 163 | Chr5: 6824184-6824346 | Arabidopsis thaliana |
AT5G20220:exon:9 | 89 | Chr5: 6824431-6824519 | Arabidopsis thaliana |
AT5G20220:exon:10 | 133 | Chr5: 6824598-6824730 | Arabidopsis thaliana |
AT5G20220:exon:11 | 93 | Chr5: 6824816-6824908 | Arabidopsis thaliana |
AT5G20220:exon:12 | 103 | Chr5: 6825008-6825110 | Arabidopsis thaliana |
AT5G20220:exon:15 | 611 | Chr5: 6825371-6825981 | Arabidopsis thaliana |
AT5G20225:exon:3 | 1149 | Chr5: 6824535-6825683 | Arabidopsis thaliana |
AT5G20225:exon:1 | 339 | Chr5: 6825774-6826112 | Arabidopsis thaliana |
AT5G20225:exon:2 | 1091 | Chr5: 6825008-6826098 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20220:five_prime_UTR:1 | 218 | Chr5: 6821881-6822098 | Arabidopsis thaliana |
AT5G20220:five_prime_UTR:3 | 266 | Chr5: 6821894-6822159 | Arabidopsis thaliana |
AT5G20220:five_prime_UTR:2 | 205 | Chr5: 6821894-6822098 | Arabidopsis thaliana |
AT5G20220:five_prime_UTR:6 | 21 | Chr5: 6822187-6822207 | Arabidopsis thaliana |
AT5G20220:five_prime_UTR:4 | 109 | Chr5: 6821990-6822098 | Arabidopsis thaliana |
AT5G20220:five_prime_UTR:5 | 28 | Chr5: 6822180-6822207 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G20225 | locus:4010713963 | AT5G20225 | 1578 | Chr5: 6824535-6826112 | A. thaliana | Natural antisense transcript overlaps with AT5G20220;(source:Araport11) | NULL | other RNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G20220.3 | 1067 | Chr5: 6821881-6825157 |
AT5G20220.4 | 1496 | Chr5: 6821894-6825771 |
AT5G20220.1 | 1618 | Chr5: 6821894-6825981 |
AT5G20220.2 | 1529 | Chr5: 6821990-6825981 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G20220:three_prime_UTR:1 | 210 | Chr5: 6825772-6825981 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE24750 | 145 | Chr5: 6823933-6824077 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE24750:transposon_fragment:1 | 145 | Chr5: 6823933-6824077 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...