External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 26, Exons: 16, Five Prime UTRs: 6, Gene: 1, mRNAs: 4, Three Prime UTRs: 2, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G19210:CDS:1 | 269 | Chr5: 6461444-6461712 | Arabidopsis thaliana |
AT5G19210:CDS:2 | 94 | Chr5: 6461805-6461898 | Arabidopsis thaliana |
AT5G19210:CDS:3 | 114 | Chr5: 6461992-6462105 | Arabidopsis thaliana |
AT5G19210:CDS:5 | 114 | Chr5: 6462180-6462293 | Arabidopsis thaliana |
AT5G19210:CDS:6 | 105 | Chr5: 6462376-6462480 | Arabidopsis thaliana |
AT5G19210:CDS:7 | 159 | Chr5: 6462618-6462776 | Arabidopsis thaliana |
AT5G19210:CDS:8 | 69 | Chr5: 6462898-6462966 | Arabidopsis thaliana |
AT5G19210:CDS:9 | 90 | Chr5: 6463040-6463129 | Arabidopsis thaliana |
AT5G19210:CDS:10 | 141 | Chr5: 6463207-6463347 | Arabidopsis thaliana |
AT5G19210:CDS:11 | 264 | Chr5: 6463424-6463687 | Arabidopsis thaliana |
AT5G19210:CDS:4 | 6 | Chr5: 6462100-6462105 | Arabidopsis thaliana |
AT5G19210:CDS:5.1 | 114 | Chr5: 6462180-6462293 | Arabidopsis thaliana |
AT5G19210:CDS:6.1 | 105 | Chr5: 6462376-6462480 | Arabidopsis thaliana |
AT5G19210:CDS:7.1 | 159 | Chr5: 6462618-6462776 | Arabidopsis thaliana |
AT5G19210:CDS:8.1 | 69 | Chr5: 6462898-6462966 | Arabidopsis thaliana |
AT5G19210:CDS:9.1 | 90 | Chr5: 6463040-6463129 | Arabidopsis thaliana |
AT5G19210:CDS:10.1 | 141 | Chr5: 6463207-6463347 | Arabidopsis thaliana |
AT5G19210:CDS:11.1 | 264 | Chr5: 6463424-6463687 | Arabidopsis thaliana |
AT5G19210:CDS:4.1 | 6 | Chr5: 6462100-6462105 | Arabidopsis thaliana |
AT5G19210:CDS:5.2 | 114 | Chr5: 6462180-6462293 | Arabidopsis thaliana |
AT5G19210:CDS:6.2 | 105 | Chr5: 6462376-6462480 | Arabidopsis thaliana |
AT5G19210:CDS:7.2 | 159 | Chr5: 6462618-6462776 | Arabidopsis thaliana |
AT5G19210:CDS:8.2 | 69 | Chr5: 6462898-6462966 | Arabidopsis thaliana |
AT5G19210:CDS:9.2 | 90 | Chr5: 6463040-6463129 | Arabidopsis thaliana |
AT5G19210:CDS:10.2 | 141 | Chr5: 6463207-6463347 | Arabidopsis thaliana |
AT5G19210:CDS:11.2 | 264 | Chr5: 6463424-6463687 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G19210:exon:1 | 445 | Chr5: 6461268-6461712 | Arabidopsis thaliana |
AT5G19210:exon:6 | 114 | Chr5: 6461992-6462105 | Arabidopsis thaliana |
AT5G19210:exon:2 | 348 | Chr5: 6461365-6461712 | Arabidopsis thaliana |
AT5G19210:exon:5 | 301 | Chr5: 6461805-6462105 | Arabidopsis thaliana |
AT5G19210:exon:14 | 264 | Chr5: 6463424-6463687 | Arabidopsis thaliana |
AT5G19210:exon:3 | 322 | Chr5: 6461391-6461712 | Arabidopsis thaliana |
AT5G19210:exon:4 | 94 | Chr5: 6461805-6461898 | Arabidopsis thaliana |
AT5G19210:exon:7 | 110 | Chr5: 6461996-6462105 | Arabidopsis thaliana |
AT5G19210:exon:8 | 114 | Chr5: 6462180-6462293 | Arabidopsis thaliana |
AT5G19210:exon:9 | 105 | Chr5: 6462376-6462480 | Arabidopsis thaliana |
AT5G19210:exon:10 | 159 | Chr5: 6462618-6462776 | Arabidopsis thaliana |
AT5G19210:exon:11 | 69 | Chr5: 6462898-6462966 | Arabidopsis thaliana |
AT5G19210:exon:12 | 90 | Chr5: 6463040-6463129 | Arabidopsis thaliana |
AT5G19210:exon:13 | 141 | Chr5: 6463207-6463347 | Arabidopsis thaliana |
AT5G19210:exon:15 | 443 | Chr5: 6463424-6463866 | Arabidopsis thaliana |
AT5G19220:exon:15 | 209 | Chr5: 6463824-6464032 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G19210:five_prime_UTR:1 | 176 | Chr5: 6461268-6461443 | Arabidopsis thaliana |
AT5G19210:five_prime_UTR:2 | 348 | Chr5: 6461365-6461712 | Arabidopsis thaliana |
AT5G19210:five_prime_UTR:5 | 295 | Chr5: 6461805-6462099 | Arabidopsis thaliana |
AT5G19210:five_prime_UTR:3 | 322 | Chr5: 6461391-6461712 | Arabidopsis thaliana |
AT5G19210:five_prime_UTR:4 | 94 | Chr5: 6461805-6461898 | Arabidopsis thaliana |
AT5G19210:five_prime_UTR:6 | 104 | Chr5: 6461996-6462099 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G19220 | locus:2182132 | APL1 | ADP glucose pyrophosphorylase large subunit 1 | 3008 | Chr5: 6463824-6466831 | A. thaliana | ADP glucose pyrophosphorylase large subunit 1;(source:Araport11) | Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. | ADP glucose pyrophosphorylase large subunit 1 | ADG2, APL1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G19210.2 | 1774 | Chr5: 6461268-6463866 |
AT5G19210.3 | 1591 | Chr5: 6461365-6463687 |
AT5G19210.1 | 1647 | Chr5: 6461391-6463866 |
AT5G19220.1 | 1732 | Chr5: 6463824-6466831 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G19210:three_prime_UTR:1 | 179 | Chr5: 6463688-6463866 | Arabidopsis thaliana |
AT5G19220:three_prime_UTR:1 | 107 | Chr5: 6463824-6463930 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE23375 | 416 | Chr5: 6460870-6461285 | Arabidopsis thaliana |
AT5TE23380 | 21 | Chr5: 6461288-6461308 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE23375:transposon_fragment:1 | 416 | Chr5: 6460870-6461285 | Arabidopsis thaliana |
AT5TE23380:transposon_fragment:1 | 21 | Chr5: 6461288-6461308 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RH58_ARATH RH58_ARATH-2 | similarity | Belongs to the DEAD box helicase family. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast | ECO |
molecular function | |
ATP binding | ECO |
ATP hydrolysis activity | ECO |
RNA helicase activity | ECO |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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