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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G18407:CDS:2 | 176 | Chr5: 6096949-6097124 | Arabidopsis thaliana |
AT5G18410:CDS:33 | 201 | Chr5: 6097456-6097656 | Arabidopsis thaliana |
AT5G18410:CDS:32 | 207 | Chr5: 6097752-6097958 | Arabidopsis thaliana |
AT5G18410:CDS:31 | 173 | Chr5: 6098060-6098232 | Arabidopsis thaliana |
AT5G18410:CDS:29 | 205 | Chr5: 6098332-6098536 | Arabidopsis thaliana |
AT5G18410:CDS:26 | 128 | Chr5: 6098626-6098753 | Arabidopsis thaliana |
AT5G18410:CDS:25 | 88 | Chr5: 6098839-6098926 | Arabidopsis thaliana |
AT5G18410:CDS:24 | 144 | Chr5: 6099023-6099166 | Arabidopsis thaliana |
AT5G18410:CDS:23 | 144 | Chr5: 6099310-6099453 | Arabidopsis thaliana |
AT5G18410:CDS:22 | 144 | Chr5: 6099529-6099672 | Arabidopsis thaliana |
AT5G18410:CDS:21 | 120 | Chr5: 6099766-6099885 | Arabidopsis thaliana |
AT5G18410:CDS:20 | 103 | Chr5: 6100058-6100160 | Arabidopsis thaliana |
AT5G18410:CDS:19 | 77 | Chr5: 6100255-6100331 | Arabidopsis thaliana |
AT5G18410:CDS:18 | 171 | Chr5: 6100443-6100613 | Arabidopsis thaliana |
AT5G18410:CDS:17 | 77 | Chr5: 6100711-6100787 | Arabidopsis thaliana |
AT5G18410:CDS:16 | 169 | Chr5: 6100885-6101053 | Arabidopsis thaliana |
AT5G18410:CDS:15 | 145 | Chr5: 6101140-6101284 | Arabidopsis thaliana |
AT5G18410:CDS:14 | 212 | Chr5: 6101387-6101598 | Arabidopsis thaliana |
AT5G18410:CDS:13 | 210 | Chr5: 6101669-6101878 | Arabidopsis thaliana |
AT5G18410:CDS:12 | 94 | Chr5: 6101968-6102061 | Arabidopsis thaliana |
AT5G18410:CDS:11 | 152 | Chr5: 6102166-6102317 | Arabidopsis thaliana |
AT5G18410:CDS:10 | 196 | Chr5: 6102427-6102622 | Arabidopsis thaliana |
AT5G18410:CDS:9 | 65 | Chr5: 6102768-6102832 | Arabidopsis thaliana |
AT5G18410:CDS:8 | 70 | Chr5: 6102922-6102991 | Arabidopsis thaliana |
AT5G18410:CDS:7 | 93 | Chr5: 6103176-6103268 | Arabidopsis thaliana |
AT5G18410:CDS:6 | 71 | Chr5: 6103364-6103434 | Arabidopsis thaliana |
AT5G18410:CDS:5 | 120 | Chr5: 6103521-6103640 | Arabidopsis thaliana |
AT5G18410:CDS:4 | 78 | Chr5: 6103978-6104055 | Arabidopsis thaliana |
AT5G18410:CDS:3 | 65 | Chr5: 6104196-6104260 | Arabidopsis thaliana |
AT5G18410:CDS:2 | 73 | Chr5: 6104344-6104416 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G18407:exon:2 | 210 | Chr5: 6096949-6097158 | Arabidopsis thaliana |
AT5G18410:exon:37 | 712 | Chr5: 6096945-6097656 | Arabidopsis thaliana |
AT5G18410:exon:32 | 205 | Chr5: 6098332-6098536 | Arabidopsis thaliana |
AT5G18410:exon:29 | 128 | Chr5: 6098626-6098753 | Arabidopsis thaliana |
AT5G18410:exon:1 | 239 | Chr5: 6104866-6105104 | Arabidopsis thaliana |
AT5G18410:exon:36 | 359 | Chr5: 6097298-6097656 | Arabidopsis thaliana |
AT5G18410:exon:35 | 207 | Chr5: 6097752-6097958 | Arabidopsis thaliana |
AT5G18410:exon:34 | 173 | Chr5: 6098060-6098232 | Arabidopsis thaliana |
AT5G18410:exon:33 | 199 | Chr5: 6098332-6098530 | Arabidopsis thaliana |
AT5G18410:exon:30 | 137 | Chr5: 6098617-6098753 | Arabidopsis thaliana |
AT5G18410:exon:3 | 115 | Chr5: 6104866-6104980 | Arabidopsis thaliana |
AT5G18410:exon:31 | 185 | Chr5: 6098569-6098753 | Arabidopsis thaliana |
AT5G18410:exon:28 | 88 | Chr5: 6098839-6098926 | Arabidopsis thaliana |
AT5G18410:exon:27 | 144 | Chr5: 6099023-6099166 | Arabidopsis thaliana |
AT5G18410:exon:26 | 144 | Chr5: 6099310-6099453 | Arabidopsis thaliana |
AT5G18410:exon:25 | 144 | Chr5: 6099529-6099672 | Arabidopsis thaliana |
AT5G18410:exon:24 | 120 | Chr5: 6099766-6099885 | Arabidopsis thaliana |
AT5G18410:exon:23 | 103 | Chr5: 6100058-6100160 | Arabidopsis thaliana |
AT5G18410:exon:22 | 77 | Chr5: 6100255-6100331 | Arabidopsis thaliana |
AT5G18410:exon:21 | 171 | Chr5: 6100443-6100613 | Arabidopsis thaliana |
AT5G18410:exon:20 | 77 | Chr5: 6100711-6100787 | Arabidopsis thaliana |
AT5G18410:exon:19 | 169 | Chr5: 6100885-6101053 | Arabidopsis thaliana |
AT5G18410:exon:18 | 145 | Chr5: 6101140-6101284 | Arabidopsis thaliana |
AT5G18410:exon:17 | 212 | Chr5: 6101387-6101598 | Arabidopsis thaliana |
AT5G18410:exon:16 | 210 | Chr5: 6101669-6101878 | Arabidopsis thaliana |
AT5G18410:exon:15 | 94 | Chr5: 6101968-6102061 | Arabidopsis thaliana |
AT5G18410:exon:14 | 152 | Chr5: 6102166-6102317 | Arabidopsis thaliana |
AT5G18410:exon:13 | 196 | Chr5: 6102427-6102622 | Arabidopsis thaliana |
AT5G18410:exon:12 | 65 | Chr5: 6102768-6102832 | Arabidopsis thaliana |
AT5G18410:exon:11 | 70 | Chr5: 6102922-6102991 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G18410:five_prime_UTR:1 | 239 | Chr5: 6104866-6105104 | Arabidopsis thaliana |
AT5G18410:five_prime_UTR:3 | 115 | Chr5: 6104866-6104980 | Arabidopsis thaliana |
AT5G18410:five_prime_UTR:4 | 8 | Chr5: 6104784-6104791 | Arabidopsis thaliana |
AT5G18410:five_prime_UTR:2 | 166 | Chr5: 6104866-6105031 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G18407 | locus:1009023394 | AT5G18407 | 412 | Chr5: 6096747-6097158 | A. thaliana | Defensin-like (DEFL) family protein;(source:Araport11) | Encodes a defensin-like (DEFL) family protein. | Defensin-like (DEFL) family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G18407.1 | 293 | Chr5: 6096747-6097158 |
AT5G18410.2 | 4607 | Chr5: 6096945-6105104 |
AT5G18410.1 | 4133 | Chr5: 6097298-6104980 |
AT5G18410.3 | 3294 | Chr5: 6098569-6105031 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G18407:three_prime_UTR:1 | 34 | Chr5: 6097125-6097158 | Arabidopsis thaliana |
AT5G18410:three_prime_UTR:3 | 511 | Chr5: 6096945-6097455 | Arabidopsis thaliana |
AT5G18410:three_prime_UTR:2 | 158 | Chr5: 6097298-6097455 | Arabidopsis thaliana |
AT5G18410:three_prime_UTR:1 | 24 | Chr5: 6098569-6098592 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PIR_ARATH PIR_ARATH-2 | function | Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases. |
PIR_ARATH PIR_ARATH-2 | tissue specificity | Expressed in roots, root hairs, hypocotyls, cotyledons, stems, leaves, trichomes and flowers. |
Function
Gene Ontology
cellular component | |
---|---|
SCAR complex | ECO |
molecular function | |
small GTPase binding | ECO |
biological process | |
trichome morphogenesis | ECO |
regulation of actin filament polymerization | ECO |
actin cytoskeleton organization | ECO |
actin nucleation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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