help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : PIR121 A. thaliana

DB identifier  ? AT5G18410 Secondary Identifier  ? locus:2146193
Name  ? PIROGI 121 Brief Description  transcription activator
TAIR Computational Description  transcription activator;(source:Araport11)
TAIR Curator Summary  distorted trichomes and exhibits a diffuse actin cytoskeleton
TAIR Short Description  transcription activators
TAIR Aliases  ATSRA1, KLK, LPL2, PIR, PIR121, PIRP, SRA1

1 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 8160  
Location: Chr5:6096945-6105104 reverse strand

Gene models - PIR121 AT5G18410

? Gene models

Transcripts: 3  Exons: 89  Introns: 86 

Overlapping Features

? Genome features that overlap coordinates of this Gene

40 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PIR_ARATH PIR_ARATH-2 function Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases.
PIR_ARATH PIR_ARATH-2 tissue specificity Expressed in roots, root hairs, hypocotyls, cotyledons, stems, leaves, trichomes and flowers.

3 Proteins

Function

Gene Ontology

cellular component
SCAR complex  ? ECO  
molecular function
small GTPase binding  ? ECO  
biological process
trichome morphogenesis  ? ECO  
regulation of actin filament polymerization  ? ECO  
actin cytoskeleton organization  ? ECO  
actin nucleation  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets