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Gene : AT5G18340 A. thaliana

DB identifier  ? AT5G18340 Secondary Identifier  ? locus:2146213
Brief Description  ARM repeat superfamily protein
TAIR Computational Description  ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary  One of three tandemly located, paralogous plant U-box proteins. Mutants show increased sensitivity to water stress. E3 ligase which acts as a regulator in the heat response signaling pathway. Over-expressing AtPUB48 could induce the expression of the heat-related genes (HSP101, HSP70, HSP25.3, HSFA2, and ZAT12). Enhances plant resistance to heat stress during seed germination and seedling growth.
TAIR Short Description  ARM repeat superfamily protein
TAIR Aliases  PUB48

1 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1989  
Location: Chr5:6070346-6072334 reverse strand

Gene models - AT5G18340 AT5G18340

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

3 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PUB48_ARATH function Functions as an E3 ubiquitin ligase.
PUB48_ARATH pathway Protein modification; protein ubiquitination.

1 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
ubiquitin protein ligase activity  ? ECO  
ubiquitin-protein transferase activity  ? ECO  
biological process
protein ubiquitination  ? ECO  
regulation of cellular response to heat  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets