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Gene : AT5G18330 A. thaliana

DB identifier  ? AT5G18330 Secondary Identifier  ? locus:2146198
Brief Description  ARM repeat superfamily protein
TAIR Computational Description  ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary  One of three tandemly located, paralogous plant U-box proteins. Expression in root is enhanced by auxin and to a lesser extent ABA and cytokinin.PUB47 is expressed at lower levels than PUB46 and PUB48. Expression increased in response to salt, osmotic and oxidative stress.
TAIR Short Description  ARM repeat superfamily protein
TAIR Aliases  PUB47

0 Gene Rifs

1 Organism

4 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1569  
Location: Chr5:6068474-6070042 reverse strand

Gene models - AT5G18330 AT5G18330

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 2, Exons: 2, mRNA: 1

3 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PUB47_ARATH function Functions as an E3 ubiquitin ligase.
PUB47_ARATH pathway Protein modification; protein ubiquitination.

1 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
ubiquitin-protein transferase activity  ? ECO  
biological process
protein ubiquitination  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets