help | faq | software | BAR

Gene : AT5G18180 A. thaliana

DB identifier	AT5G18180	Secondary Identifier	locus:2172329
Brief Description	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

TAIR Computational Description	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein;(source:Araport11)
TAIR Curator Summary	NULL
TAIR Short Description	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region:	gene	Length:	1201
Location:	Chr5:6008561-6009761 reverse strand

Genes

DB identifier	Secondary Identifier	Symbol	Name	Length	Chromosome Location	Organism . Short Name	TAIR Computational Description	TAIR Curator Summary	TAIR Short Description	TAIR Aliases
AT5G18170	locus:2172309	GDH1	glutamate dehydrogenase 1	2692	Chr5: 6006035-6008726	A. thaliana	glutamate dehydrogenase 1;(source:Araport11)	Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	glutamate dehydrogenase 1	GDH1

Hide

Show all in a table »

Show all in a table »

5 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Show proteins
Curated comments from UniProt

Type	Comment	Proteins
NLAL2_ARATH	function	Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).
NLAL2_ARATH	similarity	Belongs to the GAR1 family.

1 Proteins

Function

Gene Ontology

cellular component
nucleolus	ECO
ribonucleoprotein complex	ECO
chloroplast thylakoid membrane	ECO
molecular function
RNA binding	ECO
biological process
pseudouridine synthesis	ECO
rRNA processing	ECO

Interactions

Interaction Network

Show the following interaction types:

Reset view

Show in table format

Export graph

Click on a gene to get more info about it.

Expression

Data Source:

BAR Webservices

Querying ATTED Service... Data Source: ATTED-II

Homology

0 Homologues

Other

6 Data Sets

Questions? Comments? Click here!