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Gene : AT5G18180 A. thaliana

DB identifier  ? AT5G18180 Secondary Identifier  ? locus:2172329
Brief Description  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
TAIR Computational Description  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1201  
Location: Chr5:6008561-6009761 reverse strand

Gene models - AT5G18180 AT5G18180

? Gene models

Transcripts: 1  Exons: 4  Introns: 3 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
NLAL2_ARATH function Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).
NLAL2_ARATH similarity Belongs to the GAR1 family.

1 Proteins

Function

Gene Ontology

cellular component
nucleolus  ? ECO  
ribonucleoprotein complex  ? ECO  
chloroplast thylakoid membrane  ? ECO  
molecular function
RNA binding  ? ECO  
biological process
pseudouridine synthesis  ? ECO  
rRNA processing  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets