help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT5G17380 A. thaliana

DB identifier  ? AT5G17380 Secondary Identifier  ? locus:2167205
Brief Description  Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
TAIR Computational Description  Thiamine pyrophosphate dependent pyruvate decarboxylase family protein;(source:Araport11)
TAIR Curator Summary  Encodes a 2-hydroxy-phytanoyl-CoA lyase that is involved in phytol degradation by alpha-oxidation of fatty acids.
TAIR Short Description  Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
TAIR Aliases  AtHPCL, HPCL

0 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2154  
Location: Chr5:5724759-5726912 reverse strand

Gene models - AT5G17380 AT5G17380

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

3 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
HACL_ARATH function Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
HACL_ARATH similarity Belongs to the TPP enzyme family.

1 Proteins

Function

Gene Ontology

cellular component
plastid  ? ECO  
peroxisome  ? ECO  
cytosol  ? ECO  
molecular function
carboxy-lyase activity  ? ECO  
magnesium ion binding  ? ECO  
thiamine pyrophosphate binding  ? ECO  
biological process
fatty acid alpha-oxidation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets