External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 15, Exons: 12, Five Prime UTRs: 3, Genes: 2, mRNAs: 4, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16840:CDS:1 | 6 | Chr5: 5536042-5536047 | Arabidopsis thaliana |
AT5G16840:CDS:2 | 110 | Chr5: 5536755-5536864 | Arabidopsis thaliana |
AT5G16840:CDS:5 | 67 | Chr5: 5537027-5537093 | Arabidopsis thaliana |
AT5G16840:CDS:6 | 75 | Chr5: 5537317-5537391 | Arabidopsis thaliana |
AT5G16840:CDS:7 | 522 | Chr5: 5537505-5538026 | Arabidopsis thaliana |
AT5G16840:CDS:1.1 | 6 | Chr5: 5536042-5536047 | Arabidopsis thaliana |
AT5G16840:CDS:2.1 | 110 | Chr5: 5536755-5536864 | Arabidopsis thaliana |
AT5G16840:CDS:4 | 70 | Chr5: 5537024-5537093 | Arabidopsis thaliana |
AT5G16840:CDS:6.1 | 75 | Chr5: 5537317-5537391 | Arabidopsis thaliana |
AT5G16840:CDS:7.1 | 522 | Chr5: 5537505-5538026 | Arabidopsis thaliana |
AT5G16840:CDS:1.2 | 6 | Chr5: 5536042-5536047 | Arabidopsis thaliana |
AT5G16840:CDS:3 | 104 | Chr5: 5536761-5536864 | Arabidopsis thaliana |
AT5G16840:CDS:5.1 | 67 | Chr5: 5537027-5537093 | Arabidopsis thaliana |
AT5G16840:CDS:6.2 | 75 | Chr5: 5537317-5537391 | Arabidopsis thaliana |
AT5G16840:CDS:7.2 | 522 | Chr5: 5537505-5538026 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16840:exon:1 | 203 | Chr5: 5535845-5536047 | Arabidopsis thaliana |
AT5G16840:exon:2 | 179 | Chr5: 5535869-5536047 | Arabidopsis thaliana |
AT5G16840:exon:4 | 110 | Chr5: 5536755-5536864 | Arabidopsis thaliana |
AT5G16840:exon:6 | 70 | Chr5: 5537024-5537093 | Arabidopsis thaliana |
AT5G16840:exon:10 | 746 | Chr5: 5537505-5538250 | Arabidopsis thaliana |
AT5G16840:exon:3 | 124 | Chr5: 5535924-5536047 | Arabidopsis thaliana |
AT5G16840:exon:5 | 104 | Chr5: 5536761-5536864 | Arabidopsis thaliana |
AT5G16840:exon:7 | 67 | Chr5: 5537027-5537093 | Arabidopsis thaliana |
AT5G16840:exon:8 | 75 | Chr5: 5537317-5537391 | Arabidopsis thaliana |
AT5G16840:exon:9 | 647 | Chr5: 5537505-5538151 | Arabidopsis thaliana |
AT5G02605:exon:1 | 750 | Chr5: 5536027-5536776 | Arabidopsis thaliana |
AT5G16850:exon:15 | 417 | Chr5: 5538180-5538596 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16840:five_prime_UTR:1 | 197 | Chr5: 5535845-5536041 | Arabidopsis thaliana |
AT5G16840:five_prime_UTR:2 | 173 | Chr5: 5535869-5536041 | Arabidopsis thaliana |
AT5G16840:five_prime_UTR:3 | 118 | Chr5: 5535924-5536041 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G02605 | AT5G02605 | 750 | Chr5: 5536027-5536776 | A. thaliana | Natural antisense transcript overlaps with AT5G16840;(source:Araport11) | NULL | ||||
AT5G16850 | locus:2148975 | TERT | telomerase reverse transcriptase | 5478 | Chr5: 5538180-5543657 | A. thaliana | telomerase reverse transcriptase;(source:Araport11) | Encodes the catalytic subunit of telomerase reverse transcriptase. Involved in telomere homeostasis. Homozygous double mutants with ATR show gross morphological defects over a period of generations. TERT shows Class II telomerase activity in vitro, indicating that it can initiate de novo telomerase synthesis on non-telomeric DNA, often using a preferred position within the telomerase-bound RNA. Loss of function mutants have reduced telomere length in roots and over a period of generations, decreasing root meristem function. | telomerase reverse transcriptase | ATTERT, TERT |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G16840.1 | 1201 | Chr5: 5535845-5538250 |
AT5G16840.2 | 1180 | Chr5: 5535869-5538250 |
AT5G16840.3 | 1017 | Chr5: 5535924-5538151 |
AT5G16850.1 | 3630 | Chr5: 5538180-5543559 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16840:three_prime_UTR:2 | 224 | Chr5: 5538027-5538250 | Arabidopsis thaliana |
AT5G16840:three_prime_UTR:1 | 125 | Chr5: 5538027-5538151 | Arabidopsis thaliana |
AT5G16850:three_prime_UTR:1 | 143 | Chr5: 5538180-5538322 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
plastid | ECO |
molecular function | |
RNA binding | ECO |
biological process | |
negative regulation of plant-type hypersensitive response | ECO |
defense response to fungus | ECO |
Interactions
Interaction Network
Error loading results. Please clear your cache and try again.
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...