External Links
- Aracyc
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- Plant Proteome Database
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 14, Exons: 13, Five Prime UTRs: 2, Gene: 1, mRNAs: 4, Three Prime UTRs: 6, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16520:CDS:9 | 182 | Chr5: 5394740-5394921 | Arabidopsis thaliana |
AT5G16520:CDS:8 | 151 | Chr5: 5395111-5395261 | Arabidopsis thaliana |
AT5G16520:CDS:7 | 174 | Chr5: 5395342-5395515 | Arabidopsis thaliana |
AT5G16520:CDS:5 | 90 | Chr5: 5395608-5395697 | Arabidopsis thaliana |
AT5G16520:CDS:4 | 71 | Chr5: 5395864-5395934 | Arabidopsis thaliana |
AT5G16520:CDS:3 | 701 | Chr5: 5396060-5396760 | Arabidopsis thaliana |
AT5G16520:CDS:2 | 92 | Chr5: 5396829-5396920 | Arabidopsis thaliana |
AT5G16520:CDS:1 | 366 | Chr5: 5397006-5397371 | Arabidopsis thaliana |
AT5G16520:CDS:6 | 15 | Chr5: 5395466-5395480 | Arabidopsis thaliana |
AT5G16520:CDS:5.1 | 90 | Chr5: 5395608-5395697 | Arabidopsis thaliana |
AT5G16520:CDS:4.1 | 71 | Chr5: 5395864-5395934 | Arabidopsis thaliana |
AT5G16520:CDS:3.1 | 701 | Chr5: 5396060-5396760 | Arabidopsis thaliana |
AT5G16520:CDS:2.1 | 92 | Chr5: 5396829-5396920 | Arabidopsis thaliana |
AT5G16520:CDS:1.1 | 366 | Chr5: 5397006-5397371 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16510:exon:3 | 1340 | Chr5: 5393226-5394565 | Arabidopsis thaliana |
AT5G16510:exon:4 | 1348 | Chr5: 5393226-5394573 | Arabidopsis thaliana |
AT5G16520:exon:11 | 378 | Chr5: 5394544-5394921 | Arabidopsis thaliana |
AT5G16520:exon:7 | 174 | Chr5: 5395342-5395515 | Arabidopsis thaliana |
AT5G16520:exon:2 | 450 | Chr5: 5397006-5397455 | Arabidopsis thaliana |
AT5G16520:exon:10 | 350 | Chr5: 5394572-5394921 | Arabidopsis thaliana |
AT5G16520:exon:9 | 151 | Chr5: 5395111-5395261 | Arabidopsis thaliana |
AT5G16520:exon:8 | 139 | Chr5: 5395342-5395480 | Arabidopsis thaliana |
AT5G16520:exon:6 | 90 | Chr5: 5395608-5395697 | Arabidopsis thaliana |
AT5G16520:exon:5 | 71 | Chr5: 5395864-5395934 | Arabidopsis thaliana |
AT5G16520:exon:4 | 701 | Chr5: 5396060-5396760 | Arabidopsis thaliana |
AT5G16520:exon:3 | 92 | Chr5: 5396829-5396920 | Arabidopsis thaliana |
AT5G16520:exon:1 | 461 | Chr5: 5397006-5397466 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16520:five_prime_UTR:2 | 84 | Chr5: 5397372-5397455 | Arabidopsis thaliana |
AT5G16520:five_prime_UTR:1 | 95 | Chr5: 5397372-5397466 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G16510 | locus:2171362 | RGP5 | reversibly glycosylated polypeptide 5 | 1998 | Chr5: 5392576-5394573 | A. thaliana | Alpha-1,4-glucan-protein synthase family protein;(source:Araport11) | RGP5 is a member of the reversably-glycosylated family of proteins. Analyses using tagged RGP5 suggest that it is present in the cytosol and in association with the Golgi apparatus. Recombinant RGP5 does not have UDP-arabinose mutase activity based on an in vitro assay even though the related RGP1, RGP2, and RGP3 proteins do have activity in the same assay. RGP5 can form complexes with RGP1 and RGP2. | Alpha-1,4-glucan-protein synthase family protein | RGP5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G16510.2 | 1538 | Chr5: 5392576-5394565 |
AT5G16510.1 | 1460 | Chr5: 5392755-5394573 |
AT5G16520.1 | 2107 | Chr5: 5394544-5397455 |
AT5G16520.2 | 2055 | Chr5: 5394572-5397466 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16510:three_prime_UTR:1 | 223 | Chr5: 5394343-5394565 | Arabidopsis thaliana |
AT5G16510:three_prime_UTR:2 | 231 | Chr5: 5394343-5394573 | Arabidopsis thaliana |
AT5G16520:three_prime_UTR:4 | 196 | Chr5: 5394544-5394739 | Arabidopsis thaliana |
AT5G16520:three_prime_UTR:3 | 350 | Chr5: 5394572-5394921 | Arabidopsis thaliana |
AT5G16520:three_prime_UTR:2 | 151 | Chr5: 5395111-5395261 | Arabidopsis thaliana |
AT5G16520:three_prime_UTR:1 | 124 | Chr5: 5395342-5395465 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE19530 | 140 | Chr5: 5397388-5397527 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE19530:transposon_fragment:1 | 140 | Chr5: 5397388-5397527 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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