External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16190:CDS:12 | 148 | Chr5: 5283663-5283810 | Arabidopsis thaliana |
AT5G16190:CDS:10 | 192 | Chr5: 5283884-5284075 | Arabidopsis thaliana |
AT5G16190:CDS:8 | 200 | Chr5: 5284175-5284374 | Arabidopsis thaliana |
AT5G16190:CDS:7 | 114 | Chr5: 5284624-5284737 | Arabidopsis thaliana |
AT5G16190:CDS:6 | 137 | Chr5: 5284948-5285084 | Arabidopsis thaliana |
AT5G16190:CDS:5 | 111 | Chr5: 5285385-5285495 | Arabidopsis thaliana |
AT5G16190:CDS:4 | 253 | Chr5: 5285616-5285868 | Arabidopsis thaliana |
AT5G16190:CDS:3 | 99 | Chr5: 5286038-5286136 | Arabidopsis thaliana |
AT5G16190:CDS:1 | 261 | Chr5: 5286216-5286476 | Arabidopsis thaliana |
AT5G16190:CDS:11 | 196 | Chr5: 5283880-5284075 | Arabidopsis thaliana |
AT5G16190:CDS:8.1 | 200 | Chr5: 5284175-5284374 | Arabidopsis thaliana |
AT5G16190:CDS:7.1 | 114 | Chr5: 5284624-5284737 | Arabidopsis thaliana |
AT5G16190:CDS:6.1 | 137 | Chr5: 5284948-5285084 | Arabidopsis thaliana |
AT5G16190:CDS:5.1 | 111 | Chr5: 5285385-5285495 | Arabidopsis thaliana |
AT5G16190:CDS:4.1 | 253 | Chr5: 5285616-5285868 | Arabidopsis thaliana |
AT5G16190:CDS:3.1 | 99 | Chr5: 5286038-5286136 | Arabidopsis thaliana |
AT5G16190:CDS:1.1 | 261 | Chr5: 5286216-5286476 | Arabidopsis thaliana |
AT5G16190:CDS:12.1 | 148 | Chr5: 5283663-5283810 | Arabidopsis thaliana |
AT5G16190:CDS:9 | 491 | Chr5: 5283884-5284374 | Arabidopsis thaliana |
AT5G16190:CDS:7.2 | 114 | Chr5: 5284624-5284737 | Arabidopsis thaliana |
AT5G16190:CDS:6.2 | 137 | Chr5: 5284948-5285084 | Arabidopsis thaliana |
AT5G16190:CDS:5.2 | 111 | Chr5: 5285385-5285495 | Arabidopsis thaliana |
AT5G16190:CDS:4.2 | 253 | Chr5: 5285616-5285868 | Arabidopsis thaliana |
AT5G16190:CDS:3.2 | 99 | Chr5: 5286038-5286136 | Arabidopsis thaliana |
AT5G16190:CDS:1.2 | 261 | Chr5: 5286216-5286476 | Arabidopsis thaliana |
AT5G16190:CDS:12.2 | 148 | Chr5: 5283663-5283810 | Arabidopsis thaliana |
AT5G16190:CDS:10.1 | 192 | Chr5: 5283884-5284075 | Arabidopsis thaliana |
AT5G16190:CDS:8.2 | 200 | Chr5: 5284175-5284374 | Arabidopsis thaliana |
AT5G16190:CDS:7.3 | 114 | Chr5: 5284624-5284737 | Arabidopsis thaliana |
AT5G16190:CDS:6.3 | 137 | Chr5: 5284948-5285084 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16190:exon:15 | 364 | Chr5: 5283447-5283810 | Arabidopsis thaliana |
AT5G16190:exon:14 | 629 | Chr5: 5283447-5284075 | Arabidopsis thaliana |
AT5G16190:exon:1 | 627 | Chr5: 5286216-5286842 | Arabidopsis thaliana |
AT5G16190:exon:13 | 362 | Chr5: 5283449-5283810 | Arabidopsis thaliana |
AT5G16190:exon:10 | 491 | Chr5: 5283884-5284374 | Arabidopsis thaliana |
AT5G16190:exon:2 | 565 | Chr5: 5286216-5286780 | Arabidopsis thaliana |
AT5G16190:exon:12 | 261 | Chr5: 5283550-5283810 | Arabidopsis thaliana |
AT5G16190:exon:11 | 192 | Chr5: 5283884-5284075 | Arabidopsis thaliana |
AT5G16190:exon:9 | 200 | Chr5: 5284175-5284374 | Arabidopsis thaliana |
AT5G16190:exon:8 | 114 | Chr5: 5284624-5284737 | Arabidopsis thaliana |
AT5G16190:exon:7 | 137 | Chr5: 5284948-5285084 | Arabidopsis thaliana |
AT5G16190:exon:6 | 111 | Chr5: 5285385-5285495 | Arabidopsis thaliana |
AT5G16190:exon:5 | 253 | Chr5: 5285616-5285868 | Arabidopsis thaliana |
AT5G16190:exon:4 | 99 | Chr5: 5286038-5286136 | Arabidopsis thaliana |
AT5G16190:exon:3 | 78 | Chr5: 5286216-5286293 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16190:five_prime_UTR:1 | 366 | Chr5: 5286477-5286842 | Arabidopsis thaliana |
AT5G16190:five_prime_UTR:2 | 304 | Chr5: 5286477-5286780 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G16190.3 | 2097 | Chr5: 5283447-5286842 |
AT5G16190.2 | 2170 | Chr5: 5283447-5286842 |
AT5G16190.4 | 2132 | Chr5: 5283449-5286780 |
AT5G16190.1 | 1445 | Chr5: 5283550-5286293 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G16190:three_prime_UTR:4 | 216 | Chr5: 5283447-5283662 | Arabidopsis thaliana |
AT5G16190:three_prime_UTR:3 | 433 | Chr5: 5283447-5283879 | Arabidopsis thaliana |
AT5G16190:three_prime_UTR:2 | 214 | Chr5: 5283449-5283662 | Arabidopsis thaliana |
AT5G16190:three_prime_UTR:1 | 113 | Chr5: 5283550-5283662 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CSLAB_ARATH | function | Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. |
CSLAB_ARATH | similarity | Belongs to the glycosyltransferase 2 family. Plant cellulose synthase-like A subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
Golgi membrane | ECO |
molecular function | |
glucomannan 4-beta-mannosyltransferase activity | ECO |
biological process | |
cell wall organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...