External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 39, Exons: 15, Five Prime UTR: 1, Genes: 2, mRNAs: 5, miRNAs: 2, miRNA Primary Transcript: 1, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G14550:CDS:13 | 39 | Chr5: 4691321-4691359 | Arabidopsis thaliana |
AT5G14550:CDS:11 | 129 | Chr5: 4691464-4691592 | Arabidopsis thaliana |
AT5G14550:CDS:9 | 150 | Chr5: 4691747-4691896 | Arabidopsis thaliana |
AT5G14550:CDS:8 | 66 | Chr5: 4691989-4692054 | Arabidopsis thaliana |
AT5G14550:CDS:7 | 39 | Chr5: 4692240-4692278 | Arabidopsis thaliana |
AT5G14550:CDS:6 | 81 | Chr5: 4692549-4692629 | Arabidopsis thaliana |
AT5G14550:CDS:5 | 82 | Chr5: 4692760-4692841 | Arabidopsis thaliana |
AT5G14550:CDS:4 | 72 | Chr5: 4692917-4692988 | Arabidopsis thaliana |
AT5G14550:CDS:3 | 101 | Chr5: 4693080-4693180 | Arabidopsis thaliana |
AT5G14550:CDS:2 | 114 | Chr5: 4693262-4693375 | Arabidopsis thaliana |
AT5G14550:CDS:1 | 261 | Chr5: 4693472-4693732 | Arabidopsis thaliana |
AT5G14550:CDS:10 | 264 | Chr5: 4691633-4691896 | Arabidopsis thaliana |
AT5G14550:CDS:8.1 | 66 | Chr5: 4691989-4692054 | Arabidopsis thaliana |
AT5G14550:CDS:6.1 | 81 | Chr5: 4692549-4692629 | Arabidopsis thaliana |
AT5G14550:CDS:5.1 | 82 | Chr5: 4692760-4692841 | Arabidopsis thaliana |
AT5G14550:CDS:4.1 | 72 | Chr5: 4692917-4692988 | Arabidopsis thaliana |
AT5G14550:CDS:3.1 | 101 | Chr5: 4693080-4693180 | Arabidopsis thaliana |
AT5G14550:CDS:2.1 | 114 | Chr5: 4693262-4693375 | Arabidopsis thaliana |
AT5G14550:CDS:1.1 | 261 | Chr5: 4693472-4693732 | Arabidopsis thaliana |
AT5G14550:CDS:12 | 159 | Chr5: 4691434-4691592 | Arabidopsis thaliana |
AT5G14550:CDS:9.1 | 150 | Chr5: 4691747-4691896 | Arabidopsis thaliana |
AT5G14550:CDS:8.2 | 66 | Chr5: 4691989-4692054 | Arabidopsis thaliana |
AT5G14550:CDS:7.1 | 39 | Chr5: 4692240-4692278 | Arabidopsis thaliana |
AT5G14550:CDS:6.2 | 81 | Chr5: 4692549-4692629 | Arabidopsis thaliana |
AT5G14550:CDS:5.2 | 82 | Chr5: 4692760-4692841 | Arabidopsis thaliana |
AT5G14550:CDS:4.2 | 72 | Chr5: 4692917-4692988 | Arabidopsis thaliana |
AT5G14550:CDS:3.2 | 101 | Chr5: 4693080-4693180 | Arabidopsis thaliana |
AT5G14550:CDS:2.2 | 114 | Chr5: 4693262-4693375 | Arabidopsis thaliana |
AT5G14550:CDS:1.2 | 261 | Chr5: 4693472-4693732 | Arabidopsis thaliana |
AT5G14550:CDS:12.1 | 159 | Chr5: 4691434-4691592 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G14550:exon:14 | 354 | Chr5: 4691006-4691359 | Arabidopsis thaliana |
AT5G14550:exon:11 | 129 | Chr5: 4691464-4691592 | Arabidopsis thaliana |
AT5G14550:exon:1 | 584 | Chr5: 4693472-4694055 | Arabidopsis thaliana |
AT5G14550:exon:13 | 519 | Chr5: 4691378-4691896 | Arabidopsis thaliana |
AT5G14550:exon:7 | 81 | Chr5: 4692549-4692629 | Arabidopsis thaliana |
AT5G14550:exon:12 | 159 | Chr5: 4691434-4691592 | Arabidopsis thaliana |
AT5G14550:exon:10 | 150 | Chr5: 4691747-4691896 | Arabidopsis thaliana |
AT5G14550:exon:9 | 66 | Chr5: 4691989-4692054 | Arabidopsis thaliana |
AT5G14550:exon:8 | 39 | Chr5: 4692240-4692278 | Arabidopsis thaliana |
AT5G14550:exon:6 | 82 | Chr5: 4692760-4692841 | Arabidopsis thaliana |
AT5G14550:exon:5 | 72 | Chr5: 4692917-4692988 | Arabidopsis thaliana |
AT5G14550:exon:4 | 101 | Chr5: 4693080-4693180 | Arabidopsis thaliana |
AT5G14550:exon:3 | 114 | Chr5: 4693262-4693375 | Arabidopsis thaliana |
AT5G14550:exon:2 | 261 | Chr5: 4693472-4693732 | Arabidopsis thaliana |
AT5G14560:exon:1 | 123 | Chr5: 4693964-4694086 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G14550:five_prime_UTR:1 | 323 | Chr5: 4693733-4694055 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G14545 | locus:4010713955 | MIR398B | microRNA398B | 116 | Chr5: 4691022-4691137 | A. thaliana | microRNA ath-MIR398b precursor;(source:Araport11) | Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress. | MIR398B; miRNA | MIR398B |
AT5G14560 | locus:2222647 | AT5G14560 | 123 | Chr5: 4693964-4694086 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G14550.1 | 1772 | Chr5: 4691006-4694055 |
AT5G14550.2 | 1296 | Chr5: 4691378-4693732 |
AT5G14550.3 | 1125 | Chr5: 4691434-4693732 |
AT5G14550.4 | 1044 | Chr5: 4691434-4693732 |
AT5G14560.1 | 123 | Chr5: 4693964-4694086 |
miRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
ath-miR398b-5p | 21 | Chr5: 4691033-4691053 |
ath-miR398b-3p | 21 | Chr5: 4691107-4691127 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G14545.1 | 116 | Chr5: 4691022-4691137 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G14550:three_prime_UTR:2 | 315 | Chr5: 4691006-4691320 | Arabidopsis thaliana |
AT5G14550:three_prime_UTR:1 | 255 | Chr5: 4691378-4691632 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
glycosyltransferase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
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Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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