External Links
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- ATTED-II
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- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13980:CDS:1 | 201 | Chr5: 4508626-4508826 | Arabidopsis thaliana |
AT5G13980:CDS:2 | 84 | Chr5: 4508916-4508999 | Arabidopsis thaliana |
AT5G13980:CDS:3 | 89 | Chr5: 4509162-4509250 | Arabidopsis thaliana |
AT5G13980:CDS:4 | 175 | Chr5: 4509333-4509507 | Arabidopsis thaliana |
AT5G13980:CDS:5 | 120 | Chr5: 4509586-4509705 | Arabidopsis thaliana |
AT5G13980:CDS:6 | 87 | Chr5: 4509800-4509886 | Arabidopsis thaliana |
AT5G13980:CDS:7 | 72 | Chr5: 4509969-4510040 | Arabidopsis thaliana |
AT5G13980:CDS:8 | 114 | Chr5: 4510115-4510228 | Arabidopsis thaliana |
AT5G13980:CDS:9 | 101 | Chr5: 4510368-4510468 | Arabidopsis thaliana |
AT5G13980:CDS:10 | 94 | Chr5: 4510541-4510634 | Arabidopsis thaliana |
AT5G13980:CDS:11 | 168 | Chr5: 4510710-4510877 | Arabidopsis thaliana |
AT5G13980:CDS:12 | 75 | Chr5: 4510966-4511040 | Arabidopsis thaliana |
AT5G13980:CDS:13 | 66 | Chr5: 4511171-4511236 | Arabidopsis thaliana |
AT5G13980:CDS:14 | 57 | Chr5: 4511322-4511378 | Arabidopsis thaliana |
AT5G13980:CDS:15 | 220 | Chr5: 4511461-4511680 | Arabidopsis thaliana |
AT5G13980:CDS:16 | 140 | Chr5: 4511760-4511899 | Arabidopsis thaliana |
AT5G13980:CDS:17 | 81 | Chr5: 4511978-4512058 | Arabidopsis thaliana |
AT5G13980:CDS:18 | 60 | Chr5: 4512169-4512228 | Arabidopsis thaliana |
AT5G13980:CDS:19 | 72 | Chr5: 4512315-4512386 | Arabidopsis thaliana |
AT5G13980:CDS:20 | 48 | Chr5: 4512538-4512585 | Arabidopsis thaliana |
AT5G13980:CDS:21 | 120 | Chr5: 4512671-4512790 | Arabidopsis thaliana |
AT5G13980:CDS:22 | 66 | Chr5: 4512883-4512948 | Arabidopsis thaliana |
AT5G13980:CDS:23 | 113 | Chr5: 4513073-4513185 | Arabidopsis thaliana |
AT5G13980:CDS:24 | 85 | Chr5: 4513266-4513350 | Arabidopsis thaliana |
AT5G13980:CDS:25 | 111 | Chr5: 4513454-4513564 | Arabidopsis thaliana |
AT5G13980:CDS:26 | 96 | Chr5: 4513651-4513746 | Arabidopsis thaliana |
AT5G13980:CDS:27 | 48 | Chr5: 4513842-4513889 | Arabidopsis thaliana |
AT5G13980:CDS:29 | 69 | Chr5: 4513957-4514025 | Arabidopsis thaliana |
AT5G13980:CDS:30 | 243 | Chr5: 4514092-4514334 | Arabidopsis thaliana |
AT5G13980:CDS:1.1 | 201 | Chr5: 4508626-4508826 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13980:exon:1 | 421 | Chr5: 4508406-4508826 | Arabidopsis thaliana |
AT5G13980:exon:2 | 351 | Chr5: 4508476-4508826 | Arabidopsis thaliana |
AT5G13980:exon:31 | 69 | Chr5: 4513957-4514025 | Arabidopsis thaliana |
AT5G13980:exon:32 | 324 | Chr5: 4514092-4514415 | Arabidopsis thaliana |
AT5G13980:exon:34 | 23 | Chr5: 4514644-4514666 | Arabidopsis thaliana |
AT5G13980:exon:3 | 331 | Chr5: 4508496-4508826 | Arabidopsis thaliana |
AT5G13980:exon:4 | 84 | Chr5: 4508916-4508999 | Arabidopsis thaliana |
AT5G13980:exon:5 | 89 | Chr5: 4509162-4509250 | Arabidopsis thaliana |
AT5G13980:exon:6 | 175 | Chr5: 4509333-4509507 | Arabidopsis thaliana |
AT5G13980:exon:7 | 120 | Chr5: 4509586-4509705 | Arabidopsis thaliana |
AT5G13980:exon:8 | 87 | Chr5: 4509800-4509886 | Arabidopsis thaliana |
AT5G13980:exon:9 | 72 | Chr5: 4509969-4510040 | Arabidopsis thaliana |
AT5G13980:exon:10 | 114 | Chr5: 4510115-4510228 | Arabidopsis thaliana |
AT5G13980:exon:11 | 101 | Chr5: 4510368-4510468 | Arabidopsis thaliana |
AT5G13980:exon:12 | 94 | Chr5: 4510541-4510634 | Arabidopsis thaliana |
AT5G13980:exon:13 | 168 | Chr5: 4510710-4510877 | Arabidopsis thaliana |
AT5G13980:exon:14 | 75 | Chr5: 4510966-4511040 | Arabidopsis thaliana |
AT5G13980:exon:15 | 66 | Chr5: 4511171-4511236 | Arabidopsis thaliana |
AT5G13980:exon:16 | 57 | Chr5: 4511322-4511378 | Arabidopsis thaliana |
AT5G13980:exon:17 | 220 | Chr5: 4511461-4511680 | Arabidopsis thaliana |
AT5G13980:exon:18 | 140 | Chr5: 4511760-4511899 | Arabidopsis thaliana |
AT5G13980:exon:19 | 81 | Chr5: 4511978-4512058 | Arabidopsis thaliana |
AT5G13980:exon:20 | 60 | Chr5: 4512169-4512228 | Arabidopsis thaliana |
AT5G13980:exon:21 | 72 | Chr5: 4512315-4512386 | Arabidopsis thaliana |
AT5G13980:exon:22 | 48 | Chr5: 4512538-4512585 | Arabidopsis thaliana |
AT5G13980:exon:23 | 120 | Chr5: 4512671-4512790 | Arabidopsis thaliana |
AT5G13980:exon:24 | 66 | Chr5: 4512883-4512948 | Arabidopsis thaliana |
AT5G13980:exon:25 | 113 | Chr5: 4513073-4513185 | Arabidopsis thaliana |
AT5G13980:exon:26 | 85 | Chr5: 4513266-4513350 | Arabidopsis thaliana |
AT5G13980:exon:27 | 111 | Chr5: 4513454-4513564 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13980:five_prime_UTR:1 | 220 | Chr5: 4508406-4508625 | Arabidopsis thaliana |
AT5G13980:five_prime_UTR:2 | 150 | Chr5: 4508476-4508625 | Arabidopsis thaliana |
AT5G13980:five_prime_UTR:3 | 130 | Chr5: 4508496-4508625 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G13990 | locus:2159058 | EXO70C2 | exocyst subunit exo70 family protein C2 | 2325 | Chr5: 4514568-4516892 | A. thaliana | exocyst subunit exo70 family protein C2;(source:Araport11) | A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. This particular member is expressed in pollen and is involved in pollen tube elongation. Found in the cytoplasm and surprisingly, not found in the plasma membrane and is not found to colocalize with or interact with core exocyst subunits. | exocyst subunit exo70 family protein C2 | ATEXO70C2, EXO70C2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G13980.1 | 3386 | Chr5: 4508406-4514425 |
AT5G13980.2 | 3329 | Chr5: 4508476-4514666 |
AT5G13980.3 | 3327 | Chr5: 4508496-4514425 |
AT5G13990.1 | 2325 | Chr5: 4514568-4516892 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13980:three_prime_UTR:4 | 91 | Chr5: 4514335-4514425 | Arabidopsis thaliana |
AT5G13980:three_prime_UTR:3 | 81 | Chr5: 4514335-4514415 | Arabidopsis thaliana |
AT5G13980:three_prime_UTR:5 | 23 | Chr5: 4514644-4514666 | Arabidopsis thaliana |
AT5G13980:three_prime_UTR:1 | 97 | Chr5: 4513929-4514025 | Arabidopsis thaliana |
AT5G13980:three_prime_UTR:2 | 334 | Chr5: 4514092-4514425 | Arabidopsis thaliana |
AT5G13990:three_prime_UTR:1 | 112 | Chr5: 4514568-4514679 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
MANA2_ARATH | function | Liberates mannose from p-nitrophenyl-alpha-D-mannoside in vitro. |
MANA2_ARATH F4K5E7_ARATH | similarity | Belongs to the glycosyl hydrolase 38 family. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
secretory vesicle | ECO |
apoplast | ECO |
vacuole | ECO |
molecular function | |
alpha-mannosidase activity | ECO |
metal ion binding | ECO |
carbohydrate binding | ECO |
biological process | |
mannose metabolic process | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...