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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 36, Exons: 19, Five Prime UTRs: 7, Gene: 1, mRNAs: 4, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13950:CDS:10 | 1593 | Chr5: 4496196-4497788 | Arabidopsis thaliana |
AT5G13950:CDS:9 | 124 | Chr5: 4497864-4497987 | Arabidopsis thaliana |
AT5G13950:CDS:8 | 161 | Chr5: 4498081-4498241 | Arabidopsis thaliana |
AT5G13950:CDS:7 | 139 | Chr5: 4498534-4498672 | Arabidopsis thaliana |
AT5G13950:CDS:6 | 150 | Chr5: 4498769-4498918 | Arabidopsis thaliana |
AT5G13950:CDS:4 | 84 | Chr5: 4499171-4499254 | Arabidopsis thaliana |
AT5G13950:CDS:3 | 114 | Chr5: 4499344-4499457 | Arabidopsis thaliana |
AT5G13950:CDS:2 | 137 | Chr5: 4499654-4499790 | Arabidopsis thaliana |
AT5G13950:CDS:1 | 318 | Chr5: 4499889-4500206 | Arabidopsis thaliana |
AT5G13950:CDS:10.1 | 1593 | Chr5: 4496196-4497788 | Arabidopsis thaliana |
AT5G13950:CDS:9.1 | 124 | Chr5: 4497864-4497987 | Arabidopsis thaliana |
AT5G13950:CDS:8.1 | 161 | Chr5: 4498081-4498241 | Arabidopsis thaliana |
AT5G13950:CDS:7.1 | 139 | Chr5: 4498534-4498672 | Arabidopsis thaliana |
AT5G13950:CDS:6.1 | 150 | Chr5: 4498769-4498918 | Arabidopsis thaliana |
AT5G13950:CDS:4.1 | 84 | Chr5: 4499171-4499254 | Arabidopsis thaliana |
AT5G13950:CDS:3.1 | 114 | Chr5: 4499344-4499457 | Arabidopsis thaliana |
AT5G13950:CDS:2.1 | 137 | Chr5: 4499654-4499790 | Arabidopsis thaliana |
AT5G13950:CDS:1.1 | 318 | Chr5: 4499889-4500206 | Arabidopsis thaliana |
AT5G13950:CDS:10.2 | 1593 | Chr5: 4496196-4497788 | Arabidopsis thaliana |
AT5G13950:CDS:9.2 | 124 | Chr5: 4497864-4497987 | Arabidopsis thaliana |
AT5G13950:CDS:8.2 | 161 | Chr5: 4498081-4498241 | Arabidopsis thaliana |
AT5G13950:CDS:7.2 | 139 | Chr5: 4498534-4498672 | Arabidopsis thaliana |
AT5G13950:CDS:6.2 | 150 | Chr5: 4498769-4498918 | Arabidopsis thaliana |
AT5G13950:CDS:4.2 | 84 | Chr5: 4499171-4499254 | Arabidopsis thaliana |
AT5G13950:CDS:3.2 | 114 | Chr5: 4499344-4499457 | Arabidopsis thaliana |
AT5G13950:CDS:2.2 | 137 | Chr5: 4499654-4499790 | Arabidopsis thaliana |
AT5G13950:CDS:1.2 | 318 | Chr5: 4499889-4500206 | Arabidopsis thaliana |
AT5G13950:CDS:10.3 | 1593 | Chr5: 4496196-4497788 | Arabidopsis thaliana |
AT5G13950:CDS:9.3 | 124 | Chr5: 4497864-4497987 | Arabidopsis thaliana |
AT5G13950:CDS:8.3 | 161 | Chr5: 4498081-4498241 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G02125:exon:2 | 54 | Chr5: 4495798-4495851 | Arabidopsis thaliana |
AT5G13950:exon:4 | 387 | Chr5: 4500349-4500735 | Arabidopsis thaliana |
AT5G13950:exon:18 | 1945 | Chr5: 4495844-4497788 | Arabidopsis thaliana |
AT5G13950:exon:1 | 130 | Chr5: 4500606-4500735 | Arabidopsis thaliana |
AT5G13950:exon:17 | 1758 | Chr5: 4496031-4497788 | Arabidopsis thaliana |
AT5G13950:exon:10 | 84 | Chr5: 4499171-4499254 | Arabidopsis thaliana |
AT5G13950:exon:6 | 79 | Chr5: 4500349-4500427 | Arabidopsis thaliana |
AT5G13950:exon:3 | 76 | Chr5: 4500606-4500681 | Arabidopsis thaliana |
AT5G13950:exon:16 | 1638 | Chr5: 4496151-4497788 | Arabidopsis thaliana |
AT5G13950:exon:15 | 124 | Chr5: 4497864-4497987 | Arabidopsis thaliana |
AT5G13950:exon:14 | 161 | Chr5: 4498081-4498241 | Arabidopsis thaliana |
AT5G13950:exon:13 | 139 | Chr5: 4498534-4498672 | Arabidopsis thaliana |
AT5G13950:exon:12 | 150 | Chr5: 4498769-4498918 | Arabidopsis thaliana |
AT5G13950:exon:11 | 129 | Chr5: 4499126-4499254 | Arabidopsis thaliana |
AT5G13950:exon:9 | 114 | Chr5: 4499344-4499457 | Arabidopsis thaliana |
AT5G13950:exon:8 | 137 | Chr5: 4499654-4499790 | Arabidopsis thaliana |
AT5G13950:exon:7 | 319 | Chr5: 4499889-4500207 | Arabidopsis thaliana |
AT5G13950:exon:5 | 83 | Chr5: 4500349-4500431 | Arabidopsis thaliana |
AT5G13950:exon:2 | 120 | Chr5: 4500606-4500725 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13950:five_prime_UTR:4 | 387 | Chr5: 4500349-4500735 | Arabidopsis thaliana |
AT5G13950:five_prime_UTR:1 | 130 | Chr5: 4500606-4500735 | Arabidopsis thaliana |
AT5G13950:five_prime_UTR:6 | 79 | Chr5: 4500349-4500427 | Arabidopsis thaliana |
AT5G13950:five_prime_UTR:3 | 76 | Chr5: 4500606-4500681 | Arabidopsis thaliana |
AT5G13950:five_prime_UTR:7 | 1 | Chr5: 4500207-4500207 | Arabidopsis thaliana |
AT5G13950:five_prime_UTR:5 | 83 | Chr5: 4500349-4500431 | Arabidopsis thaliana |
AT5G13950:five_prime_UTR:2 | 120 | Chr5: 4500606-4500725 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G02125 | AT5G02125 | 528 | Chr5: 4495324-4495851 | A. thaliana | Natural antisense transcript overlaps with AT5G13940;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G13950.4 | 3560 | Chr5: 4495844-4500735 |
AT5G13950.1 | 3386 | Chr5: 4495844-4500735 |
AT5G13950.2 | 3141 | Chr5: 4496031-4500681 |
AT5G13950.3 | 3114 | Chr5: 4496151-4500725 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13950:three_prime_UTR:3 | 352 | Chr5: 4495844-4496195 | Arabidopsis thaliana |
AT5G13950:three_prime_UTR:2 | 165 | Chr5: 4496031-4496195 | Arabidopsis thaliana |
AT5G13950:three_prime_UTR:1 | 45 | Chr5: 4496151-4496195 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
Ino80 complex | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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