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Gene : TBP1 A. thaliana

DB identifier  ? AT5G13820 Secondary Identifier  ? locus:2159048
Name  ? telomeric DNA binding protein 1 Brief Description  telomeric DNA binding protein 1
TAIR Computational Description  telomeric DNA binding protein 1;(source:Araport11)
TAIR Curator Summary  Encodes a protein that specifically binds plant telomeric DNA repeats. It has a single Myb telomeric DNA-binding (SANT) domain in C-terminus that prefers the sequence TTTAGGG. Single Myb Histone (SMH) gene family member.
TAIR Short Description  telomeric DNA binding protein 1
TAIR Aliases  ATBP-1, ATBP1, ATTBP1, HPPBF-1, TBP1

2 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3898  
Location: Chr5:4460840-4464737

Gene models - TBP1 AT5G13820

? Gene models

Transcripts: 2  Exons: 19  Introns: 17 

Overlapping Features

? Genome features that overlap coordinates of this Gene

14 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
TRP4_ARATH function Binds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending.
TRP4_ARATH tissue specificity Expressed ubiquitously. Highest expression in flowers and roots.

1 Proteins

Function

Gene Ontology

cellular component
chromosome, telomeric region  ? ECO  
nucleus  ? ECO  
molecular function
telomeric DNA binding  ? ECO  
double-stranded telomeric DNA binding  ? ECO  
DNA binding  ? ECO  
biological process
telomere maintenance  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets