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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11380:CDS:1 | 153 | Chr5: 3630172-3630324 | Arabidopsis thaliana |
AT5G11380:CDS:2 | 126 | Chr5: 3630479-3630604 | Arabidopsis thaliana |
AT5G11380:CDS:3 | 168 | Chr5: 3630693-3630860 | Arabidopsis thaliana |
AT5G11380:CDS:4 | 148 | Chr5: 3630974-3631121 | Arabidopsis thaliana |
AT5G11380:CDS:5 | 269 | Chr5: 3631263-3631531 | Arabidopsis thaliana |
AT5G11380:CDS:6 | 268 | Chr5: 3631677-3631944 | Arabidopsis thaliana |
AT5G11380:CDS:7 | 257 | Chr5: 3632029-3632285 | Arabidopsis thaliana |
AT5G11380:CDS:9 | 279 | Chr5: 3632375-3632653 | Arabidopsis thaliana |
AT5G11380:CDS:12 | 30 | Chr5: 3632733-3632762 | Arabidopsis thaliana |
AT5G11380:CDS:1.1 | 153 | Chr5: 3630172-3630324 | Arabidopsis thaliana |
AT5G11380:CDS:2.1 | 126 | Chr5: 3630479-3630604 | Arabidopsis thaliana |
AT5G11380:CDS:3.1 | 168 | Chr5: 3630693-3630860 | Arabidopsis thaliana |
AT5G11380:CDS:4.1 | 148 | Chr5: 3630974-3631121 | Arabidopsis thaliana |
AT5G11380:CDS:5.1 | 269 | Chr5: 3631263-3631531 | Arabidopsis thaliana |
AT5G11380:CDS:6.1 | 268 | Chr5: 3631677-3631944 | Arabidopsis thaliana |
AT5G11380:CDS:7.1 | 257 | Chr5: 3632029-3632285 | Arabidopsis thaliana |
AT5G11380:CDS:10 | 333 | Chr5: 3632375-3632707 | Arabidopsis thaliana |
AT5G11380:CDS:1.2 | 153 | Chr5: 3630172-3630324 | Arabidopsis thaliana |
AT5G11380:CDS:2.2 | 126 | Chr5: 3630479-3630604 | Arabidopsis thaliana |
AT5G11380:CDS:3.2 | 168 | Chr5: 3630693-3630860 | Arabidopsis thaliana |
AT5G11380:CDS:4.2 | 148 | Chr5: 3630974-3631121 | Arabidopsis thaliana |
AT5G11380:CDS:5.2 | 269 | Chr5: 3631263-3631531 | Arabidopsis thaliana |
AT5G11380:CDS:6.2 | 268 | Chr5: 3631677-3631944 | Arabidopsis thaliana |
AT5G11380:CDS:7.2 | 257 | Chr5: 3632029-3632285 | Arabidopsis thaliana |
AT5G11380:CDS:8 | 207 | Chr5: 3632375-3632581 | Arabidopsis thaliana |
AT5G11380:CDS:11 | 168 | Chr5: 3632698-3632865 | Arabidopsis thaliana |
AT5G11380:CDS:1.3 | 153 | Chr5: 3630172-3630324 | Arabidopsis thaliana |
AT5G11380:CDS:2.3 | 126 | Chr5: 3630479-3630604 | Arabidopsis thaliana |
AT5G11380:CDS:3.3 | 168 | Chr5: 3630693-3630860 | Arabidopsis thaliana |
AT5G11380:CDS:4.3 | 148 | Chr5: 3630974-3631121 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11380:exon:1 | 337 | Chr5: 3629988-3630324 | Arabidopsis thaliana |
AT5G11380:exon:13 | 290 | Chr5: 3632733-3633022 | Arabidopsis thaliana |
AT5G11380:exon:15 | 388 | Chr5: 3633101-3633488 | Arabidopsis thaliana |
AT5G11380:exon:11 | 648 | Chr5: 3632375-3633022 | Arabidopsis thaliana |
AT5G11380:exon:9 | 207 | Chr5: 3632375-3632581 | Arabidopsis thaliana |
AT5G11380:exon:12 | 325 | Chr5: 3632698-3633022 | Arabidopsis thaliana |
AT5G11380:exon:2 | 336 | Chr5: 3629989-3630324 | Arabidopsis thaliana |
AT5G11380:exon:3 | 126 | Chr5: 3630479-3630604 | Arabidopsis thaliana |
AT5G11380:exon:4 | 168 | Chr5: 3630693-3630860 | Arabidopsis thaliana |
AT5G11380:exon:5 | 148 | Chr5: 3630974-3631121 | Arabidopsis thaliana |
AT5G11380:exon:6 | 269 | Chr5: 3631263-3631531 | Arabidopsis thaliana |
AT5G11380:exon:7 | 268 | Chr5: 3631677-3631944 | Arabidopsis thaliana |
AT5G11380:exon:8 | 257 | Chr5: 3632029-3632285 | Arabidopsis thaliana |
AT5G11380:exon:10 | 279 | Chr5: 3632375-3632653 | Arabidopsis thaliana |
AT5G11380:exon:14 | 285 | Chr5: 3632738-3633022 | Arabidopsis thaliana |
AT5G11380:exon:16 | 411 | Chr5: 3633101-3633511 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11380:five_prime_UTR:1 | 184 | Chr5: 3629988-3630171 | Arabidopsis thaliana |
AT5G11380:five_prime_UTR:2 | 183 | Chr5: 3629989-3630171 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G11380.2 | 2530 | Chr5: 3629988-3633488 |
AT5G11380.3 | 2631 | Chr5: 3629989-3633511 |
AT5G11380.4 | 2515 | Chr5: 3629989-3633511 |
AT5G11380.1 | 2547 | Chr5: 3629989-3633511 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11380:three_prime_UTR:2 | 260 | Chr5: 3632763-3633022 | Arabidopsis thaliana |
AT5G11380:three_prime_UTR:4 | 388 | Chr5: 3633101-3633488 | Arabidopsis thaliana |
AT5G11380:three_prime_UTR:1 | 315 | Chr5: 3632708-3633022 | Arabidopsis thaliana |
AT5G11380:three_prime_UTR:3 | 157 | Chr5: 3632866-3633022 | Arabidopsis thaliana |
AT5G11380:three_prime_UTR:5 | 411 | Chr5: 3633101-3633511 | Arabidopsis thaliana |
AT5G11380:three_prime_UTR:6 | 261 | Chr5: 3633251-3633511 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A654G078_ARATH | pathway | Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1. |
A0A654G078_ARATH | similarity | Belongs to the transketolase family. DXPS subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
metal ion binding | ECO |
1-deoxy-D-xylulose-5-phosphate synthase activity | ECO |
biological process | |
1-deoxy-D-xylulose 5-phosphate biosynthetic process | ECO |
terpenoid biosynthetic process | ECO |
thiamine biosynthetic process | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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