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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11030:CDS:17 | 245 | Chr5: 3490993-3491237 | Arabidopsis thaliana |
AT5G11030:CDS:15 | 52 | Chr5: 3491427-3491478 | Arabidopsis thaliana |
AT5G11030:CDS:13 | 159 | Chr5: 3491872-3492030 | Arabidopsis thaliana |
AT5G11030:CDS:12 | 78 | Chr5: 3492221-3492298 | Arabidopsis thaliana |
AT5G11030:CDS:9 | 329 | Chr5: 3492888-3493216 | Arabidopsis thaliana |
AT5G11030:CDS:8 | 151 | Chr5: 3493310-3493460 | Arabidopsis thaliana |
AT5G11030:CDS:7 | 60 | Chr5: 3493574-3493633 | Arabidopsis thaliana |
AT5G11030:CDS:6 | 167 | Chr5: 3493749-3493915 | Arabidopsis thaliana |
AT5G11030:CDS:5 | 73 | Chr5: 3494240-3494312 | Arabidopsis thaliana |
AT5G11030:CDS:4 | 150 | Chr5: 3494402-3494551 | Arabidopsis thaliana |
AT5G11030:CDS:3 | 180 | Chr5: 3494650-3494829 | Arabidopsis thaliana |
AT5G11030:CDS:1 | 165 | Chr5: 3494986-3495150 | Arabidopsis thaliana |
AT5G11030:CDS:17.1 | 245 | Chr5: 3490993-3491237 | Arabidopsis thaliana |
AT5G11030:CDS:15.1 | 52 | Chr5: 3491427-3491478 | Arabidopsis thaliana |
AT5G11030:CDS:13.1 | 159 | Chr5: 3491872-3492030 | Arabidopsis thaliana |
AT5G11030:CDS:12.1 | 78 | Chr5: 3492221-3492298 | Arabidopsis thaliana |
AT5G11030:CDS:10 | 72 | Chr5: 3492733-3492804 | Arabidopsis thaliana |
AT5G11030:CDS:9.1 | 329 | Chr5: 3492888-3493216 | Arabidopsis thaliana |
AT5G11030:CDS:8.1 | 151 | Chr5: 3493310-3493460 | Arabidopsis thaliana |
AT5G11030:CDS:7.1 | 60 | Chr5: 3493574-3493633 | Arabidopsis thaliana |
AT5G11030:CDS:6.1 | 167 | Chr5: 3493749-3493915 | Arabidopsis thaliana |
AT5G11030:CDS:5.1 | 73 | Chr5: 3494240-3494312 | Arabidopsis thaliana |
AT5G11030:CDS:4.1 | 150 | Chr5: 3494402-3494551 | Arabidopsis thaliana |
AT5G11030:CDS:3.1 | 180 | Chr5: 3494650-3494829 | Arabidopsis thaliana |
AT5G11030:CDS:1.1 | 165 | Chr5: 3494986-3495150 | Arabidopsis thaliana |
AT5G11030:CDS:14 | 192 | Chr5: 3491839-3492030 | Arabidopsis thaliana |
AT5G11030:CDS:12.2 | 78 | Chr5: 3492221-3492298 | Arabidopsis thaliana |
AT5G11030:CDS:10.1 | 72 | Chr5: 3492733-3492804 | Arabidopsis thaliana |
AT5G11030:CDS:9.2 | 329 | Chr5: 3492888-3493216 | Arabidopsis thaliana |
AT5G11030:CDS:8.2 | 151 | Chr5: 3493310-3493460 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11030:exon:22 | 450 | Chr5: 3490788-3491237 | Arabidopsis thaliana |
AT5G11030:exon:1 | 188 | Chr5: 3494986-3495173 | Arabidopsis thaliana |
AT5G11030:exon:20 | 431 | Chr5: 3490807-3491237 | Arabidopsis thaliana |
AT5G11030:exon:15 | 604 | Chr5: 3491427-3492030 | Arabidopsis thaliana |
AT5G11030:exon:21 | 419 | Chr5: 3490807-3491225 | Arabidopsis thaliana |
AT5G11030:exon:2 | 150 | Chr5: 3494986-3495135 | Arabidopsis thaliana |
AT5G11030:exon:19 | 394 | Chr5: 3490832-3491225 | Arabidopsis thaliana |
AT5G11030:exon:16 | 52 | Chr5: 3491427-3491478 | Arabidopsis thaliana |
AT5G11030:exon:18 | 646 | Chr5: 3490833-3491478 | Arabidopsis thaliana |
AT5G11030:exon:14 | 159 | Chr5: 3491872-3492030 | Arabidopsis thaliana |
AT5G11030:exon:17 | 1198 | Chr5: 3490833-3492030 | Arabidopsis thaliana |
AT5G11030:exon:13 | 78 | Chr5: 3492221-3492298 | Arabidopsis thaliana |
AT5G11030:exon:11 | 72 | Chr5: 3492733-3492804 | Arabidopsis thaliana |
AT5G11030:exon:12 | 102 | Chr5: 3492703-3492804 | Arabidopsis thaliana |
AT5G11030:exon:10 | 329 | Chr5: 3492888-3493216 | Arabidopsis thaliana |
AT5G11030:exon:9 | 151 | Chr5: 3493310-3493460 | Arabidopsis thaliana |
AT5G11030:exon:8 | 60 | Chr5: 3493574-3493633 | Arabidopsis thaliana |
AT5G11030:exon:7 | 167 | Chr5: 3493749-3493915 | Arabidopsis thaliana |
AT5G11030:exon:6 | 73 | Chr5: 3494240-3494312 | Arabidopsis thaliana |
AT5G11030:exon:5 | 150 | Chr5: 3494402-3494551 | Arabidopsis thaliana |
AT5G11030:exon:4 | 180 | Chr5: 3494650-3494829 | Arabidopsis thaliana |
AT5G11030:exon:3 | 147 | Chr5: 3494986-3495132 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11030:five_prime_UTR:1 | 23 | Chr5: 3495151-3495173 | Arabidopsis thaliana |
AT5G11030:five_prime_UTR:2 | 57 | Chr5: 3495079-3495135 | Arabidopsis thaliana |
AT5G11030:five_prime_UTR:3 | 54 | Chr5: 3495079-3495132 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G11030.1 | 2037 | Chr5: 3490788-3495173 |
AT5G11030.2 | 2109 | Chr5: 3490788-3495173 |
AT5G11030.4 | 2445 | Chr5: 3490807-3495135 |
AT5G11030.5 | 2433 | Chr5: 3490807-3495135 |
AT5G11030.6 | 2040 | Chr5: 3490807-3495135 |
AT5G11030.3 | 1940 | Chr5: 3490832-3495132 |
AT5G11030.8 | 2212 | Chr5: 3490833-3495132 |
AT5G11030.7 | 2605 | Chr5: 3490833-3495132 |
AT5G11030.9 | 1359 | Chr5: 3492703-3495132 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11030:three_prime_UTR:9 | 205 | Chr5: 3490788-3490992 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:6 | 431 | Chr5: 3490807-3491237 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:7 | 419 | Chr5: 3490807-3491225 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:2 | 412 | Chr5: 3491427-3491838 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:8 | 186 | Chr5: 3490807-3490992 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:5 | 161 | Chr5: 3490832-3490992 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:4 | 571 | Chr5: 3490833-3491403 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:3 | 1006 | Chr5: 3490833-3491838 | Arabidopsis thaliana |
AT5G11030:three_prime_UTR:1 | 15 | Chr5: 3492703-3492717 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ALF4_ARATH ALF4_ARATH-2 ALF4_ARATH-3 | function | Required for the initiation of lateral roots independent from auxin signaling. May function in maintaining the pericycle in the mitotically competent state needed for lateral root formation. |
ALF4_ARATH ALF4_ARATH-2 ALF4_ARATH-3 | tissue specificity | Widely expressed. Expressed throughout the root tip, stele and lateral primordia. Also expressed in the shoots. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
cytoplasm | ECO |
molecular function | |
ubiquitin-protein transferase inhibitor activity | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...