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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11010:CDS:1 | 167 | Chr5: 3484176-3484342 | Arabidopsis thaliana |
AT5G11010:CDS:2 | 98 | Chr5: 3484600-3484697 | Arabidopsis thaliana |
AT5G11010:CDS:3 | 40 | Chr5: 3484810-3484849 | Arabidopsis thaliana |
AT5G11010:CDS:4 | 158 | Chr5: 3484930-3485087 | Arabidopsis thaliana |
AT5G11010:CDS:5 | 184 | Chr5: 3485168-3485351 | Arabidopsis thaliana |
AT5G11010:CDS:6 | 178 | Chr5: 3485440-3485617 | Arabidopsis thaliana |
AT5G11010:CDS:7 | 100 | Chr5: 3485700-3485799 | Arabidopsis thaliana |
AT5G11010:CDS:9 | 182 | Chr5: 3485886-3486067 | Arabidopsis thaliana |
AT5G11010:CDS:1.1 | 167 | Chr5: 3484176-3484342 | Arabidopsis thaliana |
AT5G11010:CDS:2.1 | 98 | Chr5: 3484600-3484697 | Arabidopsis thaliana |
AT5G11010:CDS:3.1 | 40 | Chr5: 3484810-3484849 | Arabidopsis thaliana |
AT5G11010:CDS:4.1 | 158 | Chr5: 3484930-3485087 | Arabidopsis thaliana |
AT5G11010:CDS:5.1 | 184 | Chr5: 3485168-3485351 | Arabidopsis thaliana |
AT5G11010:CDS:6.1 | 178 | Chr5: 3485440-3485617 | Arabidopsis thaliana |
AT5G11010:CDS:7.1 | 100 | Chr5: 3485700-3485799 | Arabidopsis thaliana |
AT5G11010:CDS:9.1 | 182 | Chr5: 3485886-3486067 | Arabidopsis thaliana |
AT5G11010:CDS:1.2 | 167 | Chr5: 3484176-3484342 | Arabidopsis thaliana |
AT5G11010:CDS:2.2 | 98 | Chr5: 3484600-3484697 | Arabidopsis thaliana |
AT5G11010:CDS:3.2 | 40 | Chr5: 3484810-3484849 | Arabidopsis thaliana |
AT5G11010:CDS:4.2 | 158 | Chr5: 3484930-3485087 | Arabidopsis thaliana |
AT5G11010:CDS:5.2 | 184 | Chr5: 3485168-3485351 | Arabidopsis thaliana |
AT5G11010:CDS:6.2 | 178 | Chr5: 3485440-3485617 | Arabidopsis thaliana |
AT5G11010:CDS:7.2 | 100 | Chr5: 3485700-3485799 | Arabidopsis thaliana |
AT5G11010:CDS:9.2 | 182 | Chr5: 3485886-3486067 | Arabidopsis thaliana |
AT5G11010:CDS:1.3 | 167 | Chr5: 3484176-3484342 | Arabidopsis thaliana |
AT5G11010:CDS:2.3 | 98 | Chr5: 3484600-3484697 | Arabidopsis thaliana |
AT5G11010:CDS:3.3 | 40 | Chr5: 3484810-3484849 | Arabidopsis thaliana |
AT5G11010:CDS:4.3 | 158 | Chr5: 3484930-3485087 | Arabidopsis thaliana |
AT5G11010:CDS:5.3 | 184 | Chr5: 3485168-3485351 | Arabidopsis thaliana |
AT5G11010:CDS:6.3 | 178 | Chr5: 3485440-3485617 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11010:exon:3 | 711 | Chr5: 3483632-3484342 | Arabidopsis thaliana |
AT5G11010:exon:13 | 182 | Chr5: 3485886-3486067 | Arabidopsis thaliana |
AT5G11010:exon:2 | 332 | Chr5: 3483632-3483963 | Arabidopsis thaliana |
AT5G11010:exon:1 | 232 | Chr5: 3483632-3483863 | Arabidopsis thaliana |
AT5G11010:exon:11 | 100 | Chr5: 3485700-3485799 | Arabidopsis thaliana |
AT5G11010:exon:14 | 382 | Chr5: 3485886-3486267 | Arabidopsis thaliana |
AT5G11010:exon:4 | 160 | Chr5: 3483704-3483863 | Arabidopsis thaliana |
AT5G11010:exon:5 | 189 | Chr5: 3484154-3484342 | Arabidopsis thaliana |
AT5G11010:exon:6 | 98 | Chr5: 3484600-3484697 | Arabidopsis thaliana |
AT5G11010:exon:7 | 40 | Chr5: 3484810-3484849 | Arabidopsis thaliana |
AT5G11010:exon:8 | 158 | Chr5: 3484930-3485087 | Arabidopsis thaliana |
AT5G11010:exon:9 | 184 | Chr5: 3485168-3485351 | Arabidopsis thaliana |
AT5G11010:exon:10 | 178 | Chr5: 3485440-3485617 | Arabidopsis thaliana |
AT5G11010:exon:12 | 564 | Chr5: 3485700-3486263 | Arabidopsis thaliana |
AT5G11020:exon:14 | 347 | Chr5: 3486242-3486588 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11010:five_prime_UTR:3 | 544 | Chr5: 3483632-3484175 | Arabidopsis thaliana |
AT5G11010:five_prime_UTR:2 | 332 | Chr5: 3483632-3483963 | Arabidopsis thaliana |
AT5G11010:five_prime_UTR:1 | 232 | Chr5: 3483632-3483863 | Arabidopsis thaliana |
AT5G11010:five_prime_UTR:4 | 160 | Chr5: 3483704-3483863 | Arabidopsis thaliana |
AT5G11010:five_prime_UTR:5 | 22 | Chr5: 3484154-3484175 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G11020 | locus:2183835 | AT5G11020 | 3075 | Chr5: 3486242-3489316 | A. thaliana | Protein kinase superfamily protein;(source:Araport11) | NULL | Protein kinase superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G11010.4 | 1651 | Chr5: 3483632-3486067 |
AT5G11010.3 | 1661 | Chr5: 3483632-3486267 |
AT5G11010.2 | 1561 | Chr5: 3483632-3486267 |
AT5G11010.1 | 1571 | Chr5: 3483704-3486263 |
AT5G11020.1 | 1832 | Chr5: 3486242-3489316 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G11010:three_prime_UTR:2 | 200 | Chr5: 3486068-3486267 | Arabidopsis thaliana |
AT5G11010:three_prime_UTR:1 | 432 | Chr5: 3485832-3486263 | Arabidopsis thaliana |
AT5G11020:three_prime_UTR:1 | 197 | Chr5: 3486242-3486438 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NOL9_ARATH-2 NOL9_ARATH | function | Polynucleotide 5'-kinase involved in rRNA processing. |
NOL9_ARATH-2 NOL9_ARATH | similarity | Belongs to the Clp1 family. NOL9/GRC3 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
molecular function | |
ATP binding | ECO |
polynucleotide 5'-hydroxyl-kinase activity | ECO |
biological process | |
rRNA processing | ECO |
phosphorylation | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...