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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10680:CDS:1 | 726 | Chr5: 3373584-3374309 | Arabidopsis thaliana |
AT5G10680:CDS:1.1 | 726 | Chr5: 3373584-3374309 | Arabidopsis thaliana |
AT5G10690:CDS:11 | 225 | Chr5: 3374443-3374667 | Arabidopsis thaliana |
AT5G10690:CDS:10 | 177 | Chr5: 3374765-3374941 | Arabidopsis thaliana |
AT5G10690:CDS:9 | 69 | Chr5: 3375084-3375152 | Arabidopsis thaliana |
AT5G10690:CDS:8 | 78 | Chr5: 3375266-3375343 | Arabidopsis thaliana |
AT5G10690:CDS:7 | 233 | Chr5: 3375484-3375716 | Arabidopsis thaliana |
AT5G10690:CDS:6 | 136 | Chr5: 3375819-3375954 | Arabidopsis thaliana |
AT5G10690:CDS:5 | 69 | Chr5: 3376076-3376144 | Arabidopsis thaliana |
AT5G10690:CDS:4 | 162 | Chr5: 3376260-3376421 | Arabidopsis thaliana |
AT5G10690:CDS:3 | 98 | Chr5: 3376501-3376598 | Arabidopsis thaliana |
AT5G10690:CDS:2 | 133 | Chr5: 3376726-3376858 | Arabidopsis thaliana |
AT5G10690:CDS:1 | 363 | Chr5: 3376970-3377332 | Arabidopsis thaliana |
AT5G10690:CDS:11.1 | 225 | Chr5: 3374443-3374667 | Arabidopsis thaliana |
AT5G10690:CDS:10.1 | 177 | Chr5: 3374765-3374941 | Arabidopsis thaliana |
AT5G10690:CDS:9.1 | 69 | Chr5: 3375084-3375152 | Arabidopsis thaliana |
AT5G10690:CDS:8.1 | 78 | Chr5: 3375266-3375343 | Arabidopsis thaliana |
AT5G10690:CDS:7.1 | 233 | Chr5: 3375484-3375716 | Arabidopsis thaliana |
AT5G10690:CDS:6.1 | 136 | Chr5: 3375819-3375954 | Arabidopsis thaliana |
AT5G10690:CDS:5.1 | 69 | Chr5: 3376076-3376144 | Arabidopsis thaliana |
AT5G10690:CDS:4.1 | 162 | Chr5: 3376260-3376421 | Arabidopsis thaliana |
AT5G10690:CDS:3.1 | 98 | Chr5: 3376501-3376598 | Arabidopsis thaliana |
AT5G10690:CDS:2.1 | 133 | Chr5: 3376726-3376858 | Arabidopsis thaliana |
AT5G10690:CDS:1.1 | 363 | Chr5: 3376970-3377332 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10680:exon:3 | 945 | Chr5: 3373470-3374414 | Arabidopsis thaliana |
AT5G10680:exon:2 | 950 | Chr5: 3373360-3374309 | Arabidopsis thaliana |
AT5G10690:exon:15 | 488 | Chr5: 3373640-3374127 | Arabidopsis thaliana |
AT5G10690:exon:14 | 60 | Chr5: 3374251-3374310 | Arabidopsis thaliana |
AT5G10690:exon:12 | 230 | Chr5: 3374438-3374667 | Arabidopsis thaliana |
AT5G10690:exon:2 | 482 | Chr5: 3376970-3377451 | Arabidopsis thaliana |
AT5G10690:exon:13 | 298 | Chr5: 3374370-3374667 | Arabidopsis thaliana |
AT5G10690:exon:11 | 177 | Chr5: 3374765-3374941 | Arabidopsis thaliana |
AT5G10690:exon:10 | 69 | Chr5: 3375084-3375152 | Arabidopsis thaliana |
AT5G10690:exon:9 | 78 | Chr5: 3375266-3375343 | Arabidopsis thaliana |
AT5G10690:exon:8 | 233 | Chr5: 3375484-3375716 | Arabidopsis thaliana |
AT5G10690:exon:7 | 136 | Chr5: 3375819-3375954 | Arabidopsis thaliana |
AT5G10690:exon:6 | 69 | Chr5: 3376076-3376144 | Arabidopsis thaliana |
AT5G10690:exon:5 | 162 | Chr5: 3376260-3376421 | Arabidopsis thaliana |
AT5G10690:exon:4 | 98 | Chr5: 3376501-3376598 | Arabidopsis thaliana |
AT5G10690:exon:3 | 133 | Chr5: 3376726-3376858 | Arabidopsis thaliana |
AT5G10690:exon:1 | 610 | Chr5: 3376970-3377579 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10690:five_prime_UTR:2 | 119 | Chr5: 3377333-3377451 | Arabidopsis thaliana |
AT5G10690:five_prime_UTR:1 | 247 | Chr5: 3377333-3377579 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G10680 | locus:2159649 | AT5G10680 | 1191 | Chr5: 3373224-3374414 | A. thaliana | calmodulin-binding protein-like protein;(source:Araport11) | NULL | calmodulin-binding protein-related |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G10680.1 | 1095 | Chr5: 3373224-3374414 |
AT5G10680.2 | 950 | Chr5: 3373360-3374309 |
AT5G10690.2 | 2415 | Chr5: 3373640-3377451 |
AT5G10690.1 | 2063 | Chr5: 3374370-3377579 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G10680:three_prime_UTR:1 | 105 | Chr5: 3374310-3374414 | Arabidopsis thaliana |
AT5G10690:three_prime_UTR:4 | 488 | Chr5: 3373640-3374127 | Arabidopsis thaliana |
AT5G10690:three_prime_UTR:3 | 60 | Chr5: 3374251-3374310 | Arabidopsis thaliana |
AT5G10690:three_prime_UTR:1 | 5 | Chr5: 3374438-3374442 | Arabidopsis thaliana |
AT5G10690:three_prime_UTR:2 | 73 | Chr5: 3374370-3374442 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PP374_ARATH | similarity | Belongs to the PPR family. P subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
mRNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...