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Gene : AT5G10150 A. thaliana

DB identifier  ? AT5G10150 Secondary Identifier  ? locus:2184133
Brief Description  UPSTREAM OF FLC protein (DUF966)
TAIR Computational Description  UPSTREAM OF FLC protein (DUF966);(source:Araport11)
TAIR Curator Summary  SOK2 is a DUF966 domain containing protein of unknown function. Expressed in discrete domains of the PM. In root endodermis and embryo, expression is in inner basal edges and in basal
TAIR Short Description  Domain of unknown function (DUF966)
TAIR Aliases  SOK2

0 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2173  
Location: Chr5:3181938-3184110 reverse strand

Gene models - AT5G10150 AT5G10150

? Gene models

Transcripts: 4  Exons: 16  Introns: 12 

Overlapping Features

? Genome features that overlap coordinates of this Gene

14 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SOK2_ARATH developmental stage During embryogenesis, first observed at the globular stage and accumulates in forming cotyledons at the heart stage (PubMed:30737509). Expressed in the inner basal edge of endodermal cells in the primary and lateral roots (PubMed:30737509).
SOK2_ARATH function Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization (PubMed:15186749, PubMed:18156133). Also regulated by FLX (PubMed:15186749). SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization (PubMed:30737509, PubMed:32004461).
SOK2_ARATH A0A1P8BC94_ARATH A0A1P8BC89_ARATH A0A1P8BC74_ARATH similarity Belongs to the SOSEKI family.
SOK2_ARATH subcellular location SOSEKI proteins integrate apical-basal and radial organismal axes to localize to polar cell edges, pointing towards the epidermis, mainly to inner basal edges.
SOK2_ARATH tissue specificity Expressed during embryogenesis and in roots.

4 Proteins

Function

Gene Ontology

cellular component
basal plasma membrane  ? ECO  
molecular function
protein homodimerization activity  ? ECO  
biological process
specification of plant organ axis polarity  ? ECO  
plant organ morphogenesis  ? ECO  
regulation of root morphogenesis  ? ECO  
regulation of cell division  ? ECO  
protein polymerization  ? ECO  
cell division  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets