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Gene : ATXR5 A. thaliana

DB identifier  ? AT5G09790 Secondary Identifier  ? locus:2144841
Name  ? ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 Brief Description  TRITHORAX-RELATED PROTEIN 5
TAIR Computational Description  TRITHORAX-RELATED PROTEIN 5;(source:Araport11)
TAIR Curator Summary  Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
TAIR Short Description  ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
TAIR Aliases  ATXR5, PDE336, SDG15

6 Gene Rifs

1 Organism

25 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2229  
Location: Chr5:3038978-3041206 reverse strand

Gene models - ATXR5 AT5G09790

? Gene models

Transcripts: 2  Exons: 12  Introns: 10 

Overlapping Features

? Genome features that overlap coordinates of this Gene

11 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ATXR5_ARATH-1 ATXR5_ARATH function Histone methyltransferase that specifically monomethylates 'Lys-27' of histone H3 (H3K27me1). Has much higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. Influences which sets of rRNA gene variants are expressed or silenced.
ATXR5_ARATH-1 ATXR5_ARATH similarity Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.
ATXR5_ARATH-1 ATXR5_ARATH subcellular location Never found in plastids and the nucleus within the same cell.
ATXR5_ARATH-1 ATXR5_ARATH tissue specificity Expressed in leaves, roots, stems, flowers, siliques and developing pollen. Up-regulated in tissues where cell division is active.

3 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
chloroplast  ? ECO  
molecular function
histone H3K27 methyltransferase activity  ? ECO  
histone H3K27 monomethyltransferase activity  ? ECO  
metal ion binding  ? ECO  
biological process
DNA-mediated transformation  ? ECO  
pollen development  ? ECO  
regulation of cell cycle  ? ECO  
regulation of DNA replication  ? ECO  
methylation  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets