help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT5G09280 A. thaliana

DB identifier  ? AT5G09280 Secondary Identifier  ? locus:2184797
Brief Description  Pectin lyase-like superfamily protein
TAIR Computational Description  Pectin lyase-like superfamily protein;(source:Araport11)
TAIR Curator Summary  Pectate lyase
TAIR Short Description  Pectin lyase-like superfamily protein
TAIR Aliases  ATPLL3

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1175  
Location: Chr5:2880423-2881597 reverse strand

Gene models - AT5G09280 AT5G09280

? Gene models

Transcripts: 1  Exons: 3  Introns: 2 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 3, Exons: 4, Gene: 1, mRNAs: 2, Three Prime UTR: 1

4 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
Q9FY87_ARATH pathway Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.
Q9FY87_ARATH similarity Belongs to the polysaccharide lyase 1 family.

1 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
pectate lyase activity  ? ECO  
metal ion binding  ? ECO  
biological process
pectin catabolic process  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets