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Gene : AT5G08720 A. thaliana

DB identifier  ? AT5G08720 Secondary Identifier  ? locus:504956340
Brief Description  polyketide cyclase/dehydrase/lipid transporter
TAIR Computational Description  polyketide cyclase/dehydrase/lipid transporter;(source:Araport11)
TAIR Curator Summary  Encodes PIN2 PROMOTER BINDING PROTEIN 1 (PPP1), an evolutionary conserved plant-specific DNA binding protein that acts on transcription of PIN genes. Also named as HCF145. Mutations in HCF145 have reduced level of the tricistronic psaA-psaB-rps (small-subunit ribosomal protein)14 mRNA which encodes for the major subunits of the photosystem I (PSI). HCF145 binds to the 5'UTR of PSAA via a novel TMR domain. It functions to stabilize the PSAA transcript.
TAIR Short Description  NULL
TAIR Aliases  HCF145, PPP1

1 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4123  
Location: Chr5:2841408-2845530 reverse strand

Gene models - AT5G08720 AT5G08720

? Gene models

Transcripts: 1  Exons: 10  Introns: 9 

Overlapping Features

? Genome features that overlap coordinates of this Gene

11 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

No comments found

1 Proteins

Function

Gene Ontology

cellular component
chloroplast nucleoid  ? ECO  
chloroplast  ? ECO  
mitochondrion  ? ECO  
molecular function
mRNA 5'-UTR binding  ? ECO  
biological process
chloroplast mRNA processing  ? ECO  
polycistronic mRNA processing  ? ECO  
regulation of photosynthesis, light reaction  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets