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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08580:CDS:7 | 129 | Chr5: 2780976-2781104 | Arabidopsis thaliana |
AT5G08580:CDS:6 | 97 | Chr5: 2781196-2781292 | Arabidopsis thaliana |
AT5G08580:CDS:5 | 174 | Chr5: 2781376-2781549 | Arabidopsis thaliana |
AT5G08580:CDS:4 | 66 | Chr5: 2781639-2781704 | Arabidopsis thaliana |
AT5G08580:CDS:3 | 103 | Chr5: 2781821-2781923 | Arabidopsis thaliana |
AT5G08580:CDS:2 | 203 | Chr5: 2782181-2782383 | Arabidopsis thaliana |
AT5G08580:CDS:1 | 404 | Chr5: 2782558-2782961 | Arabidopsis thaliana |
AT5G08580:CDS:7.1 | 129 | Chr5: 2780976-2781104 | Arabidopsis thaliana |
AT5G08580:CDS:6.1 | 97 | Chr5: 2781196-2781292 | Arabidopsis thaliana |
AT5G08580:CDS:5.1 | 174 | Chr5: 2781376-2781549 | Arabidopsis thaliana |
AT5G08580:CDS:4.1 | 66 | Chr5: 2781639-2781704 | Arabidopsis thaliana |
AT5G08580:CDS:3.1 | 103 | Chr5: 2781821-2781923 | Arabidopsis thaliana |
AT5G08580:CDS:2.1 | 203 | Chr5: 2782181-2782383 | Arabidopsis thaliana |
AT5G08580:CDS:1.1 | 404 | Chr5: 2782558-2782961 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08570:exon:7 | 1094 | Chr5: 2779488-2780581 | Arabidopsis thaliana |
AT5G08580:exon:9 | 419 | Chr5: 2780450-2780868 | Arabidopsis thaliana |
AT5G08580:exon:10 | 276 | Chr5: 2780450-2780725 | Arabidopsis thaliana |
AT5G08580:exon:8 | 61 | Chr5: 2780808-2780868 | Arabidopsis thaliana |
AT5G08580:exon:7 | 140 | Chr5: 2780965-2781104 | Arabidopsis thaliana |
AT5G08580:exon:6 | 97 | Chr5: 2781196-2781292 | Arabidopsis thaliana |
AT5G08580:exon:5 | 174 | Chr5: 2781376-2781549 | Arabidopsis thaliana |
AT5G08580:exon:4 | 66 | Chr5: 2781639-2781704 | Arabidopsis thaliana |
AT5G08580:exon:3 | 103 | Chr5: 2781821-2781923 | Arabidopsis thaliana |
AT5G08580:exon:2 | 203 | Chr5: 2782181-2782383 | Arabidopsis thaliana |
AT5G08580:exon:1 | 616 | Chr5: 2782558-2783173 | Arabidopsis thaliana |
AT5G08590:exon:2 | 796 | Chr5: 2783168-2783963 | Arabidopsis thaliana |
AT5G08590:exon:1 | 489 | Chr5: 2783168-2783656 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08580:five_prime_UTR:1 | 212 | Chr5: 2782962-2783173 | Arabidopsis thaliana |
AT5G08590:five_prime_UTR:2 | 796 | Chr5: 2783168-2783963 | Arabidopsis thaliana |
AT5G08590:five_prime_UTR:1 | 369 | Chr5: 2783168-2783536 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G08570 | locus:2159577 | AT5G08570 | 2582 | Chr5: 2778000-2780581 | A. thaliana | Pyruvate kinase family protein;(source:Araport11) | NULL | Pyruvate kinase family protein | ||
AT5G08590 | locus:2159597 | SNRK2.1 | SNF1-related protein kinase 2.1 | 2946 | Chr5: 2783168-2786113 | A. thaliana | SNF1-related protein kinase 2.1;(source:Araport11) | Encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily. | SNF1-related protein kinase 2.1 | ASK2, SNRK2-1, SNRK2.1, SRK2G |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G08570.2 | 1959 | Chr5: 2778000-2780581 |
AT5G08570.3 | 2037 | Chr5: 2778125-2780581 |
AT5G08580.2 | 1818 | Chr5: 2780450-2783173 |
AT5G08580.1 | 1736 | Chr5: 2780450-2783173 |
AT5G08590.2 | 1907 | Chr5: 2783168-2786113 |
AT5G08590.1 | 1675 | Chr5: 2783168-2786113 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08570:three_prime_UTR:2 | 281 | Chr5: 2780301-2780581 | Arabidopsis thaliana |
AT5G08580:three_prime_UTR:3 | 419 | Chr5: 2780450-2780868 | Arabidopsis thaliana |
AT5G08580:three_prime_UTR:4 | 276 | Chr5: 2780450-2780725 | Arabidopsis thaliana |
AT5G08580:three_prime_UTR:2 | 61 | Chr5: 2780808-2780868 | Arabidopsis thaliana |
AT5G08580:three_prime_UTR:1 | 11 | Chr5: 2780965-2780975 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
endoplasmic reticulum | ECO |
Golgi apparatus | ECO |
membrane | ECO |
molecular function | |
calcium ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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