help  | faq  | software  | BAR
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT5G08450 A. thaliana

DB identifier  ? AT5G08450 Secondary Identifier  ? locus:2150753
Brief Description  zinc finger CCCH domain protein
TAIR Computational Description  zinc finger CCCH domain protein;(source:Araport11)
TAIR Curator Summary  Component of histone-deacetylase complexes. Interacts with HDA6 and HDA19 and facilitates histone deacetylation. Several salt-inducible genes are de-repressed in hdc1 mutants. Mutants are hypersensitive to ABA during germination, grow less and flower later than wildtype. HDC1-overexpressing plants display opposite phenotypes.
TAIR Short Description  NULL
TAIR Aliases  HDC1, RXT3-like

2 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5313  
Location: Chr5:2727613-2732925 reverse strand

Gene models - AT5G08450 AT5G08450

? Gene models

Transcripts: 3  Exons: 36  Introns: 33 

Overlapping Features

? Genome features that overlap coordinates of this Gene

19 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

No comments found

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
No terms in this category.
biological process
developmental vegetative growth  ? ECO  
response to abscisic acid  ? ECO  
response to salt  ? ECO  
seed germination  ? ECO  
flower development  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets